Information for 11-TCAGCACCTTGGCCRG (Motif 19)

A C G T T A G C C G T A A C T G A T G C C G T A A G T C A G T C G A C T C G A T A C T G A C T G G T A C A G T C C T G A T A C G
Reverse Opposite:
A T G C A G C T C T A G A C T G G T A C G T A C C G T A C T G A C T A G A C T G A C G T A T C G G T A C A C G T A C T G C G T A
p-value:1e-9
log p-value:-2.095e+01
Information Content per bp:1.700
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif29.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets36.5 +/- 22.4bp
Average Position of motif in Background49.8 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TCAGCACCTTGGCCRG----
TTCAGCACCATGGACAGCGCC
 A C G T A C G T T A G C C G T A A C T G A T G C C G T A A G T C A G T C G A C T C G A T A C T G A C T G G T A C A G T C C T G A T A C G A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TCAGCACCTTGGCCRG----
TCAGCACCATGGACAGCTCC
 A C G T T A G C C G T A A C T G A T G C C G T A A G T C A G T C G A C T C G A T A C T G A C T G G T A C A G T C C T G A T A C G A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TCAGCACCTTGGCCRG
---TGACCTTGAV---
 A C G T T A G C C G T A A C T G A T G C C G T A A G T C A G T C G A C T C G A T A C T G A C T G G T A C A G T C C T G A T A C G
A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TCAGCACCTTGGCCRG
NNNNATGACCTTGANTN-
 A C G T A C G T A C G T T A G C C G T A A C T G A T G C C G T A A G T C A G T C G A C T C G A T A C T G A C T G G T A C A G T C C T G A T A C G
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TCAGCACCTTGGCCRG
---TGACCTTGACCT-
 A C G T T A G C C G T A A C T G A T G C C G T A A G T C A G T C G A C T C G A T A C T G A C T G G T A C A G T C C T G A T A C G
A C G T A C G T A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TCAGCACCTTGGCCRG
---TGACCTTGAN---
 A C G T T A G C C G T A A C T G A T G C C G T A A G T C A G T C G A C T C G A T A C T G A C T G G T A C A G T C C T G A T A C G
A C G T A C G T A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.58
Offset:8
Orientation:forward strand
Alignment:TCAGCACCTTGGCCRG
--------TTGGCA--
 A C G T T A G C C G T A A C T G A T G C C G T A A G T C A G T C G A C T C G A T A C T G A C T G G T A C A G T C C T G A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:TCAGCACCTTGGCCRG
-------NTTGGCANN
 A C G T T A G C C G T A A C T G A T G C C G T A A G T C A G T C G A C T C G A T A C T G A C T G G T A C A G T C C T G A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TCAGCACCTTGGCCRG
-BNTGDCCTTG-----
 A C G T T A G C C G T A A C T G A T G C C G T A A G T C A G T C G A C T C G A T A C T G A C T G G T A C A G T C C T G A T A C G
A C G T A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TCAGCACCTTGGCCRG
---TGACCTTGACCT-
 A C G T T A G C C G T A A C T G A T G C C G T A A G T C A G T C G A C T C G A T A C T G A C T G G T A C A G T C C T G A T A C G
A C G T A C G T A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T