Information for 1-CTGGGTGCCTSSK (Motif 6)

A G T C A C G T A C T G A C T G A C T G A C G T A C T G A G T C A G T C C G A T A T G C A T G C A C G T
Reverse Opposite:
G T C A A T C G A T C G C G T A A C T G A C T G A G T C C G T A A G T C A G T C A G T C G T C A C T A G
p-value:1e-12
log p-value:-2.806e+01
Information Content per bp:1.883
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.1 +/- 32.7bp
Average Position of motif in Background61.0 +/- 18.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTGGGTGCCTSSK
NNNNTTGTGTGCTTNN-
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A C G T A C T G A G T C A G T C C G A T A T G C A T G C A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGGGTGCCTSSK
CTTGAGTGGCT---
 A C G T A G T C A C G T A C T G A C T G A C T G A C G T A C T G A G T C A G T C C G A T A T G C A T G C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTGGGTGCCTSSK
NNGCGTGTGTGCNGCN-
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A C G T A C T G A G T C A G T C C G A T A T G C A T G C A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTGGGTGCCTSSK
TTGCGTGCVA---
 A G T C A C G T A C T G A C T G A C T G A C G T A C T G A G T C A G T C C G A T A T G C A T G C A C G T
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTGGGTGCCTSSK-
NNNGGGGCGCCCCCNN
 A C G T A C G T A G T C A C G T A C T G A C T G A C T G A C G T A C T G A G T C A G T C C G A T A T G C A T G C A C G T A C G T
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

PB0201.1_Zfp281_2/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTGGGTGCCTSSK
NNNATTGGGGGTNTCCT
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A C G T A C T G A G T C A G T C C G A T A T G C A T G C A C G T
A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T

Znf423/MA0116.1/Jaspar

Match Rank:7
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------CTGGGTGCCTSSK
GCACCCCTGGGTGCC----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G A C G T A C T G A G T C A G T C C G A T A T G C A T G C A C G T
A C T G T G A C G T C A G T A C A G T C A G T C G A T C C G A T C T A G A C T G A C T G A C G T A C T G A T G C A G T C A C G T A C G T A C G T A C G T

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGGGTGCCTSSK
-TGGGGCCCAC--
 A G T C A C G T A C T G A C T G A C T G A C G T A C T G A G T C A G T C C G A T A T G C A T G C A C G T
A C G T G A C T C T A G A C T G A C T G T A C G A G T C A G T C A G T C C T G A A T G C A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CTGGGTGCCTSSK
----ATGCCCACC
 A G T C A C G T A C T G A C T G A C T G A C G T A C T G A G T C A G T C C G A T A T G C A T G C A C G T
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGGGTGCCTSSK
TTAAGTGCTT---
 A G T C A C G T A C T G A C T G A C T G A C G T A C T G A G T C A G T C C G A T A T G C A T G C A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T