Information for 2-AGCGTGACGC (Motif 11)

G T C A C T A G A G T C A C T G A C G T A T C G C T G A A T G C A C T G A G T C
Reverse Opposite:
T A C G A G T C A T C G A G C T A T G C C G T A A G T C A C T G A G T C A C G T
p-value:1e-9
log p-value:-2.081e+01
Information Content per bp:1.860
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.62%
Number of Background Sequences with motif26.5
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets47.2 +/- 17.9bp
Average Position of motif in Background47.4 +/- 41.2bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:AGCGTGACGC
-NCGTGACN-
 G T C A C T A G A G T C A C T G A C G T A T C G C T G A A T G C A C T G A G T C
A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:2
Score:0.72
Offset:-8
Orientation:reverse strand
Alignment:--------AGCGTGACGC
NGCANTCATGCGTGACG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T A G A G T C A C T G A C G T A T C G C T G A A T G C A C T G A G T C
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------AGCGTGACGC
TCAGNGAGCGTGAC--
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T A G A G T C A C T G A C G T A T C G C T G A A T G C A C T G A G T C
A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AGCGTGACGC
TGCGTG----
 G T C A C T A G A G T C A C T G A C G T A T C G C T G A A T G C A C T G A G T C
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.70
Offset:-8
Orientation:reverse strand
Alignment:--------AGCGTGACGC
TGCAGTCATGCGTGACG-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T A G A G T C A C T G A C G T A T C G C T G A A T G C A C T G A G T C
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T

Atf1/MA0604.1/Jaspar

Match Rank:6
Score:0.68
Offset:3
Orientation:forward strand
Alignment:AGCGTGACGC-
---ATGACGTA
 G T C A C T A G A G T C A C T G A C G T A T C G C T G A A T G C A C T G A G T C A C G T
A C G T A C G T A C G T T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A

PB0147.1_Max_2/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----AGCGTGACGC
NNGTCGCGTGNCAC
 A C G T A C G T A C G T A C G T G T C A C T A G A G T C A C T G A C G T A T C G C T G A A T G C A C T G A G T C
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:8
Score:0.66
Offset:4
Orientation:forward strand
Alignment:AGCGTGACGC
----TGACGT
 G T C A C T A G A G T C A C T G A C G T A T C G C T G A A T G C A C T G A G T C
A C G T A C G T A C G T A C G T A C G T C A T G C G T A A G T C A C T G G A C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGCGTGACGC
TTGCGTGCVA-
 A C G T G T C A C T A G A G T C A C T G A C G T A T C G C T G A A T G C A C T G A G T C
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

Hes1/MA1099.1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGCGTGACGC
NNCGCGTGNN--
 A C G T A C G T G T C A C T A G A G T C A C T G A C G T A T C G C T G A A T G C A C T G A G T C
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T