Information for 7-CTTTGCAAGTTTARTA (Motif 15)

A G T C A C G T A C G T A C G T A T C G A G T C C G T A C G T A C T A G A G C T A C G T C G A T C G T A T C A G A G C T G T C A
Reverse Opposite:
C A G T C T G A A G C T G C A T C G T A C G T A C T G A A G T C A C G T G C A T C T A G A T G C G T C A C G T A C G T A T C A G
p-value:1e-11
log p-value:-2.695e+01
Information Content per bp:1.774
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.7 +/- 20.9bp
Average Position of motif in Background50.0 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CTTTGCAAGTTTARTA
-----CAAGCTT----
 A G T C A C G T A C G T A C G T A T C G A G T C C G T A C G T A C T A G A G C T A C G T C G A T C G T A T C A G A G C T G T C A
A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTTTGCAAGTTTARTA
CCTTGCAATTTTTNN-
 A G T C A C G T A C G T A C G T A T C G A G T C C G T A C G T A C T A G A G C T A C G T C G A T C G T A T C A G A G C T G T C A
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CTTTGCAAGTTTARTA
ANATTTTTGCAANTN-----
 A C G T A C G T A C G T A C G T A G T C A C G T A C G T A C G T A T C G A G T C C G T A C G T A C T A G A G C T A C G T C G A T C G T A T C A G A G C T G T C A
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTTTGCAAGTTTARTA
CTTGGCAA--------
 A G T C A C G T A C G T A C G T A T C G A G T C C G T A C G T A C T A G A G C T A C G T C G A T C G T A T C A G A G C T G T C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTTTGCAAGTTTARTA
NAATTTTACGAGNTNN---
 A C G T A C G T A C G T A G T C A C G T A C G T A C G T A T C G A G T C C G T A C G T A C T A G A G C T A C G T C G A T C G T A T C A G A G C T G T C A
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T A C G T A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:6
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTTTGCAAGTTTARTA
ANATTTTACGAGNNNN---
 A C G T A C G T A C G T A G T C A C G T A C G T A C G T A T C G A G T C C G T A C G T A C T A G A G C T A C G T C G A T C G T A T C A G A G C T G T C A
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTTTGCAAGTTTARTA
NNTTGGCANN-------
 A C G T A G T C A C G T A C G T A C G T A T C G A G T C C G T A C G T A C T A G A G C T A C G T C G A T C G T A T C A G A G C T G T C A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CTTTGCAAGTTTARTA
NCNTTTGTTATTTNN---
 A C G T A C G T A G T C A C G T A C G T A C G T A T C G A G T C C G T A C G T A C T A G A G C T A C G T C G A T C G T A T C A G A G C T G T C A
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T A C G T A C G T A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CTTTGCAAGTTTARTA
NTTTTACGAGN------
 A C G T A G T C A C G T A C G T A C G T A T C G A G T C C G T A C G T A C T A G A G C T A C G T C G A T C G T A T C A G A G C T G T C A
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CTTTGCAAGTTTARTA
ATTATGCTAATTT----
 A C G T A G T C A C G T A C G T A C G T A T C G A G T C C G T A C G T A C T A G A G C T A C G T C G A T C G T A T C A G A G C T G T C A
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T A C G T A C G T A C G T A C G T