Information for 5-AGGTCAGAGGTGAGTG (Motif 11)

C T G A C T A G A T C G A G C T A G T C C G T A T A C G T C G A C A T G A T C G C A G T C T A G C G T A C T A G A C G T A C T G
Reverse Opposite:
A G T C G T C A G A T C C G A T G A T C G C T A T A G C G T A C A G C T A T G C G A C T C T A G C T G A T A G C A G T C A G C T
p-value:1e-12
log p-value:-2.989e+01
Information Content per bp:1.673
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif28.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets67.6 +/- 20.7bp
Average Position of motif in Background51.8 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAGAGGTGAGTG
GAGGTCAAAGGTCA---
 A C G T C T G A C T A G A T C G A G C T A G T C C G T A T A C G T C G A C A T G A T C G C A G T C T A G C G T A C T A G A C G T A C T G
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAGAGGTGAGTG
AGGGGTCAGAGGTCA---
 A C G T A C G T C T G A C T A G A T C G A G C T A G T C C G T A T A C G T C G A C A T G A T C G C A G T C T A G C G T A C T A G A C G T A C T G
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AGGTCAGAGGTGAGTG
CAAAGGTCAAGGG------
 A C G T A C G T A C G T C T G A C T A G A T C G A G C T A G T C C G T A T A C G T C G A C A T G A T C G C A G T C T A G C G T A C T A G A C G T A C T G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAGAGGTGAGTG
TRAGGTCA----------
 A C G T A C G T C T G A C T A G A T C G A G C T A G T C C G T A T A C G T C G A C A T G A T C G C A G T C T A G C G T A C T A G A C G T A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AGGTCAGAGGTGAGTG
AGGTCA----------
 C T G A C T A G A T C G A G C T A G T C C G T A T A C G T C G A C A T G A T C G C A G T C T A G C G T A C T A G A C G T A C T G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----AGGTCAGAGGTGAGTG
ATCAAGGTCA----------
 A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A G T C C G T A T A C G T C G A C A T G A T C G C A G T C T A G C G T A C T A G A C G T A C T G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAGAGGTGAGTG
AAGGTCAC---------
 A C G T C T G A C T A G A T C G A G C T A G T C C G T A T A C G T C G A C A T G A T C G C A G T C T A G C G T A C T A G A C G T A C T G
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGGTCAGAGGTGAGTG
GAGGTCAAAGGTCA---
 A C G T C T G A C T A G A T C G A G C T A G T C C G T A T A C G T C G A C A T G A T C G C A G T C T A G C G T A C T A G A C G T A C T G
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGGTCAGAGGTGAGTG
AGRGGTCA----------
 A C G T A C G T C T G A C T A G A T C G A G C T A G T C C G T A T A C G T C G A C A T G A T C G C A G T C T A G C G T A C T A G A C G T A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AGGTCAGAGGTGAGTG
TCAAGGTCAN---------
 A C G T A C G T A C G T C T G A C T A G A T C G A G C T A G T C C G T A T A C G T C G A C A T G A T C G C A G T C T A G C G T A C T A G A C G T A C T G
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T