Information for 25-TGTCATAAATCAC (Motif 32)

A C G T A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C G T A C T G C G T A A G T C C G T A
p-value:1e-4
log p-value:-1.139e+01
Information Content per bp:1.530
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets57.9 +/- 26.7bp
Average Position of motif in Background55.2 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TGTCATAAATCAC
-GCCATAAATCA-
A C G T A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A G T C
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TGTCATAAATCAC
GGCCATAAATCAC
A C G T A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:TGTCATAAATCAC
GGCCATAAATCA-
A C G T A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TGTCATAAATCAC
GGCCATAAATCA-
A C G T A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A G T C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.74
Offset:2
Orientation:forward strand
Alignment:TGTCATAAATCAC
--TCATCAATCA-
A C G T A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A G T C
A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGTCATAAATCAC
RGCCATYAATCA-
A C G T A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A G T C
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TGTCATAAATCAC
-GYCATCMATCAT
A C G T A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A G T C
A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGTCATAAATCAC
NGYCATAAAWCH-
A C G T A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGTCATAAATCAC
-GTCATAAAAN--
A C G T A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A G T C
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TGTCATAAATCAC
-GTCGTAAAAT--
A C G T A C T G A C G T A G T C C G T A A C G T C G T A C G T A C G T A A C G T A G T C C G T A A G T C
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T