p-value: | 1e-4 |
log p-value: | -1.139e+01 |
Information Content per bp: | 1.530 |
Number of Target Sequences with motif | 9.0 |
Percentage of Target Sequences with motif | 1.17% |
Number of Background Sequences with motif | 4.9 |
Percentage of Background Sequences with motif | 0.21% |
Average Position of motif in Targets | 57.9 +/- 26.7bp |
Average Position of motif in Background | 55.2 +/- 21.6bp |
Strand Bias (log2 ratio + to - strand density) | -0.7 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Hoxa9/MA0594.1/Jaspar
Match Rank: | 1 |
Score: | 0.81 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | TGTCATAAATCAC -GCCATAAATCA- |
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Hoxc9/MA0485.1/Jaspar
Match Rank: | 2 |
Score: | 0.79 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | TGTCATAAATCAC GGCCATAAATCAC |
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Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer
Match Rank: | 3 |
Score: | 0.79 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | TGTCATAAATCAC GGCCATAAATCA- |
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HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer
Match Rank: | 4 |
Score: | 0.77 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | TGTCATAAATCAC GGCCATAAATCA- |
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Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer
Match Rank: | 5 |
Score: | 0.74 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | TGTCATAAATCAC --TCATCAATCA- |
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Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer
Match Rank: | 6 |
Score: | 0.71 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TGTCATAAATCAC RGCCATYAATCA- |
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HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer
Match Rank: | 7 |
Score: | 0.71 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | TGTCATAAATCAC -GYCATCMATCAT |
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CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer
Match Rank: | 8 |
Score: | 0.71 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | TGTCATAAATCAC NGYCATAAAWCH- |
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Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer
Match Rank: | 9 |
Score: | 0.68 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | TGTCATAAATCAC -GTCATAAAAN-- |
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HOXC10/MA0905.1/Jaspar
Match Rank: | 10 |
Score: | 0.68 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | TGTCATAAATCAC -GTCGTAAAAT-- |
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