Information for 17-AAGCAGACTGYAG (Motif 20)

C T G A C G T A C A T G A T G C G C T A C T A G C G T A G A T C G C A T C A T G A G C T C G T A A C T G
Reverse Opposite:
T G A C G C A T T C G A G T A C C G T A C T A G G C A T A G T C C G A T T A C G G T A C G C A T G A C T
p-value:1e-16
log p-value:-3.716e+01
Information Content per bp:1.473
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets51.2 +/- 25.7bp
Average Position of motif in Background33.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.50
Offset:0
Orientation:forward strand
Alignment:AAGCAGACTGYAG--
ATGCATWATGCATRW
 C T G A C G T A C A T G A T G C G C T A C T A G C G T A G A T C G C A T C A T G A G C T C G T A A C T G A C G T A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.49
Offset:0
Orientation:forward strand
Alignment:AAGCAGACTGYAG
ATGCATAATTCA-
 C T G A C G T A C A T G A T G C G C T A C T A G C G T A G A T C G C A T C A T G A G C T C G T A A C T G
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.49
Offset:3
Orientation:forward strand
Alignment:AAGCAGACTGYAG
---TWGTCTGV--
 C T G A C G T A C A T G A T G C G C T A C T A G C G T A G A T C G C A T C A T G A G C T C G T A A C T G
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:4
Score:0.49
Offset:3
Orientation:reverse strand
Alignment:AAGCAGACTGYAG
---NNNANTGA--
 C T G A C G T A C A T G A T G C G C T A C T A G C G T A G A T C G C A T C A T G A G C T C G T A A C T G
A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T

PB0042.1_Mafk_1/Jaspar

Match Rank:5
Score:0.48
Offset:-5
Orientation:forward strand
Alignment:-----AAGCAGACTGYAG
TAAAAATGCTGACTT---
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A C A T G A T G C G C T A C T A G C G T A G A T C G C A T C A T G A G C T C G T A A C T G
C G A T C G T A C G T A C G T A G C T A C G T A G A C T C A T G G T A C G C A T C A T G C G T A A G T C G C A T G A C T A C G T A C G T A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:6
Score:0.47
Offset:-2
Orientation:reverse strand
Alignment:--AAGCAGACTGYAG
CCTTGCAATTTTTNN
 A C G T A C G T C T G A C G T A C A T G A T G C G C T A C T A G C G T A G A T C G C A T C A T G A G C T C G T A A C T G
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:7
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:AAGCAGACTGYAG--
GAACADWATGTTCTT
 C T G A C G T A C A T G A T G C G C T A C T A G C G T A G A T C G C A T C A T G A G C T C G T A A C T G A C G T A C G T
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

PB0176.1_Sox5_2/Jaspar

Match Rank:8
Score:0.47
Offset:0
Orientation:forward strand
Alignment:AAGCAGACTGYAG--
TATCATAATTAAGGA
 C T G A C G T A C A T G A T G C G C T A C T A G C G T A G A T C G C A T C A T G A G C T C G T A A C T G A C G T A C G T
C G A T G C T A C G A T A G T C C T G A C A G T T G C A G C T A G C A T G A C T C G T A T G C A T A C G C A T G C G T A

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.46
Offset:1
Orientation:forward strand
Alignment:AAGCAGACTGYAG
-AGGAAACAGCTG
 C T G A C G T A C A T G A T G C G C T A C T A G C G T A G A T C G C A T C A T G A G C T C G T A A C T G
A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:10
Score:0.45
Offset:-2
Orientation:forward strand
Alignment:--AAGCAGACTGYAG
VAGRACAKNCTGTBC
 A C G T A C G T C T G A C G T A C A T G A T G C G C T A C T A G C G T A G A T C G C A T C A T G A G C T C G T A A C T G
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C