Information for 12-TGCCWGRCAKGTT (Motif 11)

A C G T A C T G A G T C A G T C G C T A C T A G C T G A G T A C G T C A A C T G A C T G A C G T C G A T
Reverse Opposite:
G C T A T G C A G T A C G T A C A C G T A C T G G A C T A G T C C G A T C T A G A C T G G T A C C G T A
p-value:1e-21
log p-value:-4.862e+01
Information Content per bp:1.699
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets47.0 +/- 27.7bp
Average Position of motif in Background60.6 +/- 22.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGCCWGRCAKGTT
ATGCCAGACN----
 A C G T A C G T A C T G A G T C A G T C G C T A C T A G C T G A G T A C G T C A A C T G A C T G A C G T C G A T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGCCWGRCAKGTT
AGGTGHCAGACA----
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C G C T A C T A G C T G A G T A C G T C A A C T G A C T G A C G T C G A T
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TGCCWGRCAKGTT
ATGCCCACC-----
 A C G T A C G T A C T G A G T C A G T C G C T A C T A G C T G A G T A C G T C A A C T G A C T G A C G T C G A T
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TGCCWGRCAKGTT
AGGTGNCAGACAG---
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C G C T A C T A G C T G A G T A C G T C A A C T G A C T G A C G T C G A T
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCCWGRCAKGTT
TTCCNGGAAG---
 A C G T A C T G A G T C A G T C G C T A C T A G C T G A G T A C G T C A A C T G A C T G A C G T C G A T
G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGCCWGRCAKGTT
TTGCCAAG------
 A C G T A C G T A C T G A G T C A G T C G C T A C T A G C T G A G T A C G T C A A C T G A C T G A C G T C G A T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TGCCWGRCAKGTT-
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C G C T A C T A G C T G A G T A C G T C A A C T G A C T G A C G T C G A T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGCCWGRCAKGTT
ATGCCAACC-----
 A C G T A C G T A C T G A G T C A G T C G C T A C T A G C T G A G T A C G T C A A C T G A C T G A C G T C G A T
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCCWGRCAKGTT--
TCCCAGMCRAGCCCC
 A C G T A C T G A G T C A G T C G C T A C T A G C T G A G T A C G T C A A C T G A C T G A C G T C G A T A C G T A C G T
A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TGCCWGRCAKGTT
--CCAGACAG---
 A C G T A C T G A G T C A G T C G C T A C T A G C T G A G T A C G T C A A C T G A C T G A C G T C G A T
A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T