Information for 1-TGACCTKGVH (Motif 2)

A C G T A C T G G T C A A T G C G T A C G A C T C A T G C T A G T G C A G T C A
Reverse Opposite:
C A G T A C G T G A T C G T A C C T G A A C T G T A C G A C G T T G A C C G T A
p-value:1e-51
log p-value:-1.194e+02
Information Content per bp:1.604
Number of Target Sequences with motif323.0
Percentage of Target Sequences with motif40.73%
Number of Background Sequences with motif8057.6
Percentage of Background Sequences with motif17.60%
Average Position of motif in Targets49.9 +/- 25.8bp
Average Position of motif in Background50.5 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TGACCTKGVH
TGACCT----
 A C G T A C T G G T C A A T G C G T A C G A C T C A T G C T A G T G C A G T C A
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TGACCTKGVH
TGACCTTGAT
 A C G T A C T G G T C A A T G C G T A C G A C T C A T G C T A G T G C A G T C A
A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-TGACCTKGVH
NTGACCTTGA-
 A C G T A C G T A C T G G T C A A T G C G T A C G A C T C A T G C T A G T G C A G T C A
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TGACCTKGVH
TGACCTYA--
 A C G T A C T G G T C A A T G C G T A C G A C T C A T G C T A G T G C A G T C A
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:5
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTKGVH
ATGACCTTGA-
 A C G T A C G T A C T G G T C A A T G C G T A C G A C T C A T G C T A G T G C A G T C A
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-TGACCTKGVH
GTGACCTT---
 A C G T A C G T A C T G G T C A A T G C G T A C G A C T C A T G C T A G T G C A G T C A
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:7
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--TGACCTKGVH
NATGACCTTGA-
 A C G T A C G T A C G T A C T G G T C A A T G C G T A C G A C T C A T G C T A G T G C A G T C A
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.85
Offset:-5
Orientation:reverse strand
Alignment:-----TGACCTKGVH--
NNNNATGACCTTGANTN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A A T G C G T A C G A C T C A T G C T A G T G C A G T C A A C G T A C G T
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:TGACCTKGVH
TGACCTTGAV
 A C G T A C T G G T C A A T G C G T A C G A C T C A T G C T A G T G C A G T C A
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:10
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TGACCTKGVH
BNTGDCCTTG--
 A C G T A C G T A C G T A C T G G T C A A T G C G T A C G A C T C A T G C T A G T G C A G T C A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T