Information for 9-CAGTCCTGAA (Motif 17)

T A G C G T C A A T C G C G A T A G T C A T G C A C G T C T A G G T C A C G T A
Reverse Opposite:
C G A T A C G T A G T C C G T A A T C G A C T G G C T A T A G C A C G T A T C G
p-value:1e-9
log p-value:-2.279e+01
Information Content per bp:1.811
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.90%
Number of Background Sequences with motif243.6
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets41.0 +/- 24.0bp
Average Position of motif in Background50.3 +/- 34.1bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0178.1_Sox8_2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCCTGAA---
NNTNTCATGAATGT
 A C G T T A G C G T C A A T C G C G A T A G T C A T G C A C G T C T A G G T C A C G T A A C G T A C G T A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGTCCTGAA----
TAAAGTCGTAAAACGT
 A C G T A C G T T A G C G T C A A T C G C G A T A G T C A T G C A C G T C T A G G T C A C G T A A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0047.1_Hoxa11/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGTCCTGAA----
TAAAGTCGTAAAACAT
 A C G T A C G T T A G C G T C A A T C G C G A T A G T C A T G C A C G T C T A G G T C A C G T A A C G T A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGTCCTGAA----
TAAAGTCGTAAAATAG
 A C G T A C G T T A G C G T C A A T C G C G A T A G T C A T G C A C G T C T A G G T C A C G T A A C G T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0076.1_Hoxd11/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAGTCCTGAA-----
TAAGGTCGTAAAATCCT
 A C G T A C G T T A G C G T C A A T C G C G A T A G T C A T G C A C G T C T A G G T C A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

HOXC10/MA0905.1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CAGTCCTGAA--
--GTCGTAAAAT
 T A G C G T C A A T C G C G A T A G T C A T G C A C G T C T A G G T C A C G T A A C G T A C G T
A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

HOXC11/MA0651.1/Jaspar

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAGTCCTGAA--
-GGTCGTAAAAT
 T A G C G T C A A T C G C G A T A G T C A T G C A C G T C T A G G T C A C G T A A C G T A C G T
A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

HOXD12/MA0873.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CAGTCCTGAA--
-AGTCGTAAAAA
 T A G C G T C A A T C G C G A T A G T C A T G C A C G T C T A G G T C A C G T A A C G T A C G T
A C G T T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

Hoxa11/MA0911.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CAGTCCTGAA---
-GGTCGTAAAATT
 T A G C G T C A A T C G C G A T A G T C A T G C A C G T C T A G G T C A C G T A A C G T A C G T A C G T
A C G T C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

PH0077.1_Hoxd12/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGTCCTGAA-----
CAAGGTCGTAAAATCTT
 A C G T A C G T T A G C G T C A A T C G C G A T A G T C A T G C A C G T C T A G G T C A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T