Information for 13-CTGGTTGACC (Motif 17)

A G T C A C G T A C T G A C T G A C G T A G C T A C T G C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T G T A C C T G A C G T A A G T C A G T C C G T A A C T G
p-value:1e-9
log p-value:-2.132e+01
Information Content per bp:1.967
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif16.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets41.1 +/- 27.9bp
Average Position of motif in Background50.1 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CTGGTTGACC-
-----TGACCT
 A G T C A C G T A C T G A C T G A C G T A G C T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T

PH0168.1_Hnf1b/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CTGGTTGACC---
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C G T A G C T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:3
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CTGGTTGACC---
-----TGACCYCT
 A G T C A C G T A C T G A C T G A C G T A G C T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTGGTTGACC-------
NNANTTGACCCCTNNNN
 A G T C A C G T A C T G A C T G A C G T A G C T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

ESR2/MA0258.2/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CTGGTTGACC-
AGGNCANNGTGACCT
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C G T A G C T A C T G C G T A A G T C A G T C A C G T
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:CTGGTTGACC---
-----TGACCTYA
 A G T C A C G T A C T G A C T G A C G T A G C T A C T G C G T A A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

PB0153.1_Nr2f2_2/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGGTTGACC-------
-NNNNTGACCCGGCGCG
 A G T C A C G T A C T G A C T G A C G T A G C T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

PH0040.1_Hmbox1/Jaspar

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CTGGTTGACC--
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C G T A G C T A C T G C G T A A G T C A G T C A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CTGGTTGACC-----
-----TGACCTTGAT
 A G T C A C G T A C T G A C T G A C G T A G C T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTGGTTGACC----
-CNNTTGACCTTTG
 A G T C A C G T A C T G A C T G A C G T A G C T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G