Information for 10-RGTTTATTAT (Motif 19)

C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G C T
Reverse Opposite:
C T G A A C G T C G T A G T C A A C G T C G T A C G T A C G T A A G T C A G C T
p-value:1e-8
log p-value:-1.902e+01
Information Content per bp:1.911
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif32.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets49.2 +/- 25.1bp
Average Position of motif in Background52.8 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX1/MA0878.1/Jaspar

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:RGTTTATTAT
-TTTTATTGC
 C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G C T
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

Foxq1/MA0040.1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---RGTTTATTAT
TATTGTTTATT--
 A C G T A C G T A C G T C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G C T
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:RGTTTATTAT
NTTTTATGAC
 C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G C T
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:RGTTTATTAT-
NTTTTATTACN
 C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G C T A C G T
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0013.1_Cdx2/Jaspar

Match Rank:5
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--RGTTTATTAT----
NAATTTTATTACCNNN
 A C G T A C G T C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G C T A C G T A C G T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-RGTTTATTAT-
DGWTTTATGRCN
 A C G T C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G C T A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0046.1_Hoxa10/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---RGTTTATTAT---
TNAATTTTATTACCTN
 A C G T A C G T A C G T C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G C T A C G T A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----RGTTTATTAT---
NTNAATTTTATTGNATT
 A C G T A C G T A C G T A C G T C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G C T A C G T A C G T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

LMX1B/MA0703.1/Jaspar

Match Rank:9
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:RGTTTATTAT
--TTAATTAN
 C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G C T
A C G T A C G T A G C T C G A T G C T A G C T A C G A T G C A T C T G A T G C A

HOXA13/MA0650.1/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:RGTTTATTAT
TTTTTATTGG
 C T G A A C T G A C G T A C G T A C G T C G T A A C G T A C G T C G T A A G C T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G