Information for 1-CCTTGGTTTA (Motif 5)

A G T C A G T C A C G T C G A T A C T G A C T G C G A T A C G T A C G T C G T A
Reverse Opposite:
A C G T G T C A G T C A G C T A A G T C A G T C C G T A C G T A C T A G A C T G
p-value:1e-7
log p-value:-1.736e+01
Information Content per bp:1.836
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif6.48%
Number of Background Sequences with motif136.6
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets62.1 +/- 29.2bp
Average Position of motif in Background49.8 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGTTTA
TGACCTTGAN---
 A C G T A C G T A C G T A G T C A G T C A C G T C G A T A C T G A C T G C G A T A C G T A C G T C G T A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CCTTGGTTTA
BNTGDCCTTG-----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C G A T A C T G A C T G C G A T A C G T A C G T C G T A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTTGGTTTA
TGACCTTGAV---
 A C G T A C G T A C G T A G T C A G T C A C G T C G A T A C T G A C T G C G A T A C G T A C G T C G T A
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CCTTGGTTTA--
----GGATTAGC
 A G T C A G T C A C G T C G A T A C T G A C T G C G A T A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCTTGGTTTA-
---GGGATTAA
 A G T C A G T C A C G T C G A T A C T G A C T G C G A T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CCTTGGTTTA--
---GGGATTANN
 A G T C A G T C A C G T C G A T A C T G A C T G C G A T A C G T A C G T C G T A A C G T A C G T
A C G T A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CCTTGGTTTA
CCTTTGTT--
 A G T C A G T C A C G T C G A T A C T G A C T G C G A T A C G T A C G T C G T A
A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.59
Offset:-8
Orientation:reverse strand
Alignment:--------CCTTGGTTTA
NNNNATGACCTTGANTN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T C G A T A C T G A C T G C G A T A C G T A C G T C G T A
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCTTGGTTTA
--NGGGATTA
 A G T C A G T C A C G T C G A T A C T G A C T G C G A T A C G T A C G T C G T A
A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A

OTX2/MA0712.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CCTTGGTTTA-
---NGGATTAA
 A G T C A G T C A C G T C G A T A C T G A C T G C G A T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A