p-value: | 1e-3 |
log p-value: | -7.282e+00 |
Information Content per bp: | 1.937 |
Number of Target Sequences with motif | 2.0 |
Percentage of Target Sequences with motif | 1.85% |
Number of Background Sequences with motif | 17.3 |
Percentage of Background Sequences with motif | 0.04% |
Average Position of motif in Targets | 53.8 +/- 28.6bp |
Average Position of motif in Background | 35.2 +/- 23.7bp |
Strand Bias (log2 ratio + to - strand density) | 2.0 |
Multiplicity (# of sites on avg that occur together) | 2.50 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Nkx2-5(var.2)/MA0503.1/Jaspar
Match Rank: | 1 |
Score: | 0.68 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | GGTACACTCA-- -AGCCACTCAAG |
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Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer
Match Rank: | 2 |
Score: | 0.68 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | GGTACACTCA- -AASCACTCAA |
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Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer
Match Rank: | 3 |
Score: | 0.65 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | GGTACACTCA- -MRSCACTYAA |
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Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer
Match Rank: | 4 |
Score: | 0.63 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | GGTACACTCA-- --RSCACTYRAG |
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AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer
Match Rank: | 5 |
Score: | 0.62 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---GGTACACTCA CCAGGAACAG--- |
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Dux/MA0611.1/Jaspar
Match Rank: | 6 |
Score: | 0.61 |
Offset: | 3 |
Orientation: | forward strand |
Alignment: | GGTACACTCA- ---CCAATCAA |
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Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer
Match Rank: | 7 |
Score: | 0.61 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | GGTACACTCA-- --NSCACTYVAV |
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Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer
Match Rank: | 8 |
Score: | 0.61 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | GGTACACTCA- -AAGCACTTAA |
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DMRT3/MA0610.1/Jaspar
Match Rank: | 9 |
Score: | 0.61 |
Offset: | -3 |
Orientation: | reverse strand |
Alignment: | ---GGTACACTCA NTTGATACATT-- |
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GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer
Match Rank: | 10 |
Score: | 0.59 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | GGTACACTCA-- GGACCACCCACG |
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