Information for 12-CTGGAGAACAATG (Motif 12)

A G T C A C G T A C T G A C T G C G T A A C T G G T C A C G T A A G T C C G T A C G T A A C G T A C T G
Reverse Opposite:
A G T C G T C A A C G T C G A T A C T G A C G T A C G T A G T C A C G T G T A C A G T C C G T A A C T G
p-value:1e-10
log p-value:-2.456e+01
Information Content per bp:1.939
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets31.5 +/- 26.9bp
Average Position of motif in Background55.0 +/- 11.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:CTGGAGAACAATG-
----AAAACAATGG
 A G T C A C G T A C T G A C T G C G T A A C T G G T C A C G T A A G T C C G T A C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:CTGGAGAACAATG-
----VRAACAATGG
 A G T C A C G T A C T G A C T G C G T A A C T G G T C A C G T A A G T C C G T A C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:CTGGAGAACAATG--
-----GAACAATGGN
 A G T C A C G T A C T G A C T G C G T A A C T G G T C A C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CTGGAGAACAATG-
NTTNAGAACAATTA
 A G T C A C G T A C T G A C T G C G T A A C T G G T C A C G T A A G T C C G T A C G T A A C G T A C T G A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTGGAGAACAATG-----
-ATAAGAACAAAGGACTA
 A G T C A C G T A C T G A C T G C G T A A C T G G T C A C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0065.1_Sox15_1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTGGAGAACAATG-----
-TAGTGAACAATAGATTT
 A G T C A C G T A C T G A C T G C G T A A C T G G T C A C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CTGGAGAACAATG-----
--AATGAACAATGGAATT
 A G T C A C G T A C T G A C T G C G T A A C T G G T C A C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTGGAGAACAATG----
-TTTAGAACAATAAAAT
 A G T C A C G T A C T G A C T G C G T A A C T G G T C A C G T A A G T C C G T A C G T A A C G T A C T G A C G T A C G T A C G T A C G T
A C G T C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CTGGAGAACAATG-
----GGAACAAAGR
 A G T C A C G T A C T G A C T G C G T A A C T G G T C A C G T A A G T C C G T A C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.68
Offset:5
Orientation:reverse strand
Alignment:CTGGAGAACAATG-
-----GAACAATGG
 A G T C A C G T A C T G A C T G C G T A A C T G G T C A C G T A A G T C C G T A C G T A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G