Information for 1-AGGTCABSNTGAC (Motif 1)

C T G A C T A G C T A G C A G T A G T C C T G A A G C T A T G C T G C A A C G T A T C G T G C A G T A C
Reverse Opposite:
A C T G A C G T A T G C G T C A A C G T T A C G T C G A A G C T T C A G G T C A G A T C G A T C G A C T
p-value:1e-62
log p-value:-1.440e+02
Information Content per bp:1.603
Number of Target Sequences with motif106.0
Percentage of Target Sequences with motif13.66%
Number of Background Sequences with motif762.9
Percentage of Background Sequences with motif1.58%
Average Position of motif in Targets56.2 +/- 23.7bp
Average Position of motif in Background51.0 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-AGGTCABSNTGAC-
NAGGTCACNNTGACC
 A C G T C T G A C T A G C T A G C A G T A G T C C T G A A G C T A T G C T G C A A C G T A T C G T G C A G T A C A C G T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

ESR2/MA0258.2/Jaspar

Match Rank:2
Score:0.88
Offset:0
Orientation:forward strand
Alignment:AGGTCABSNTGAC--
AGGTCACCCTGACCT
 C T G A C T A G C T A G C A G T A G T C C T G A A G C T A T G C T G C A A C G T A T C G T G C A G T A C A C G T A C G T
C T G A C A T G C T A G A C G T A T G C C G T A A T G C T G A C T A G C G C A T T C A G G T C A G A T C G A T C G A C T

ESR1/MA0112.3/Jaspar

Match Rank:3
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCABSNTGAC---
CAGGTCACCGTGACCTT
 A C G T C T G A C T A G C T A G C A G T A G T C C T G A A G C T A T G C T G C A A C G T A T C G T G C A G T A C A C G T A C G T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

PPARG/MA0066.1/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--AGGTCABSNTGAC-----
GTAGGTCACGGTGACCTACT
 A C G T A C G T C T G A C T A G C T A G C A G T A G T C C T G A A G C T A T G C T G C A A C G T A T C G T G C A G T A C A C G T A C G T A C G T A C G T A C G T
A T C G C G A T C T G A A T C G C A T G A C G T T A G C G C T A G T A C A T C G C A T G C A G T T A C G G T C A G T A C A G T C G A C T G T C A A T G C C G A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:AGGTCABSNTGAC
AGGTCA-------
 C T G A C T A G C T A G C A G T A G T C C T G A A G C T A T G C T G C A A C G T A T C G T G C A G T A C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGTCABSNTGAC
AGRGGTCA-------
 A C G T A C G T C T G A C T A G C T A G C A G T A G T C C T G A A G C T A T G C T G C A A C G T A T C G T G C A G T A C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGGTCABSNTGAC
TRAGGTCA-------
 A C G T A C G T C T G A C T A G C T A G C A G T A G T C C T G A A G C T A T G C T G C A A C G T A T C G T G C A G T A C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AGGTCABSNTGAC-
GTAGGTCACTGGGTCA
 A C G T A C G T C T G A C T A G C T A G C A G T A G T C C T G A A G C T A T G C T G C A A C G T A T C G T G C A G T A C A C G T
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGGTCABSNTGAC
ATCAAGGTCA-------
 A C G T A C G T A C G T A C G T C T G A C T A G C T A G C A G T A G T C C T G A A G C T A T G C T G C A A C G T A T C G T G C A G T A C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGGTCABSNTGAC
AAGGTCAC------
 A C G T C T G A C T A G C T A G C A G T A G T C C T G A A G C T A T G C T G C A A C G T A T C G T G C A G T A C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T