Information for 9-CTGTAACCTG (Motif 9)

G A T C C G A T A C T G A C G T C T G A C G T A A G T C A G T C G C A T T A C G
Reverse Opposite:
A T G C C G T A A C T G A C T G A C G T A G C T C G T A A G T C C G T A C T A G
p-value:1e-13
log p-value:-3.140e+01
Information Content per bp:1.784
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif4.27%
Number of Background Sequences with motif383.5
Percentage of Background Sequences with motif0.80%
Average Position of motif in Targets50.9 +/- 26.9bp
Average Position of motif in Background50.3 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:CTGTAACCTG
--GTGACCTT
 G A T C C G A T A C T G A C G T C T G A C G T A A G T C A G T C G C A T T A C G
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CTGTAACCTG
---TGACCT-
 G A T C C G A T A C T G A C G T C T G A C G T A A G T C A G T C G C A T T A C G
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:CTGTAACCTG-
---TGACCTYA
 G A T C C G A T A C T G A C G T C T G A C G T A A G T C A G T C G C A T T A C G A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:CTGTAACCTG-
---TGACCYCT
 G A T C C G A T A C T G A C G T C T G A C G T A A G T C A G T C G C A T T A C G A C G T
A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T

PB0159.1_Rfx4_2/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTGTAACCTG----
NNNGTAACTANGNNA
 A C G T G A T C C G A T A C T G A C G T C T G A C G T A A G T C A G T C G C A T T A C G A C G T A C G T A C G T A C G T
A C G T A T G C A T C G A C T G G A C T G T C A C G T A G T A C A G C T G C T A C A T G A T C G T A C G C A G T C G T A

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CTGTAACCTG---
---TGACCTTGAT
 G A T C C G A T A C T G A C G T C T G A C G T A A G T C A G T C G C A T T A C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTGTAACCTG--
--NTGACCTTGA
 G A T C C G A T A C T G A C G T C T G A C G T A A G T C A G T C G C A T T A C G A C G T A C G T
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

NR2F1/MA0017.2/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGTAACCTG--
CNNTTGACCTTTG
 A C G T G A T C C G A T A C T G A C G T C T G A C G T A A G T C A G T C G C A T T A C G A C G T A C G T
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTGTAACCTG----
--GWAAYHTGABMC
 G A T C C G A T A C T G A C G T C T G A C G T A A G T C A G T C G C A T T A C G A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTGTAACCTG-----
NNNGTGACCTTTGNNN
 A C G T G A T C C G A T A C T G A C G T C T G A C G T A A G T C A G T C G C A T T A C G A C G T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A