Information for 13-TCTAGTTGACTTT (Motif 17)

A C G T A G T C A C G T C G T A A C T G A C G T C G A T A C T G C G T A G T A C A C G T A C G T A C G T
Reverse Opposite:
G T C A C G T A C G T A A C T G A C G T G T A C C G T A C G T A G T A C A C G T C G T A C T A G C G T A
p-value:1e-10
log p-value:-2.474e+01
Information Content per bp:1.931
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif17.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets38.8 +/- 28.0bp
Average Position of motif in Background52.8 +/- 36.7bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.76
Offset:5
Orientation:reverse strand
Alignment:TCTAGTTGACTTT-
-----TTGACTTTT
 A C G T A G T C A C G T C G T A A C T G A C G T C G A T A C T G C G T A G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TCTAGTTGACTTT----
-NNATTGGACTTTNGNN
 A C G T A G T C A C G T C G T A A C T G A C G T C G A T A C T G C G T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TCTAGTTGACTTT
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T C G A T A C T G C G T A G T A C A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PH0168.1_Hnf1b/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TCTAGTTGACTTT-
ANNNCTAGTTAACNGNN
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T C G A T A C T G C G T A G T A C A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TCTAGTTGACTTT
--TAATTGATTA-
 A C G T A G T C A C G T C G T A A C T G A C G T C G A T A C T G C G T A G T A C A C G T A C G T A C G T
A C G T A C G T C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TCTAGTTGACTTT
-CNTGTTTACATA
 A C G T A G T C A C G T C G T A A C T G A C G T C G A T A C T G C G T A G T A C A C G T A C G T A C G T
A C G T A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:TCTAGTTGACTTT--
-----ATGACCTTGA
 A C G T A G T C A C G T C G T A A C T G A C G T C G A T A C T G C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

PB0081.1_Tcf1_1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCTAGTTGACTTT--
NNNTTAGTTAACTNANN
 A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T C G A T A C T G C G T A G T A C A C G T A C G T A C G T A C G T A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TCTAGTTGACTTT
TAAGCCACTTGAAATT
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C G T C G A T A C T G C G T A G T A C A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TCTAGTTGACTTT--
-----NTGACCTTGA
 A C G T A G T C A C G T C G T A A C T G A C G T C G A T A C T G C G T A G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A