Information for 5-WKKCACAAATTCA (Motif 9)

C G T A A C G T A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A G T C C G T A
Reverse Opposite:
C G A T A C T G G T C A C G T A A C G T A C G T A C G T A C T G A C G T A C T G G T A C G T C A C G A T
p-value:1e-10
log p-value:-2.347e+01
Information Content per bp:1.868
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets45.8 +/- 22.8bp
Average Position of motif in Background56.1 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA5/MA0158.1/Jaspar

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:WKKCACAAATTCA
---CACTAATT--
 C G T A A C G T A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A G T C C G T A
A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T A C G T

PB0171.1_Sox18_2/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:WKKCACAAATTCA----
-NNNNTGAATTCANNNC
 C G T A A C G T A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C T G C A T G G A T C G C T A A G C T C T A G G T C A C T G A G A C T C A G T G A T C T C G A T A C G A G C T T G A C G A T C

PB0145.1_Mafb_2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---WKKCACAAATTCA
CAATTGCAAAAATAT-
 A C G T A C G T A C G T C G T A A C G T A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A G T C C G T A
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-WKKCACAAATTCA
RGGGCACTAACY--
 A C G T C G T A A C G T A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A G T C C G T A
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--WKKCACAAATTCA-
AGCGGCACACACGCAA
 A C G T A C G T C G T A A C G T A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A G T C C G T A A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:WKKCACAAATTCA------
---AATCAATTCAATAATT
 C G T A A C G T A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C G T A C A G T G A T C G C T A G C T A G C A T C G A T T A G C G C T A G C T A G C A T C G T A G T C A C G A T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--WKKCACAAATTCA-
CGAAGCACACAAAATA
 A C G T A C G T C G T A A C G T A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A G T C C G T A A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:WKKCACAAATTCA------
--GACCACATTCATACAAT
 C G T A A C G T A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

TEAD4/MA0809.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:WKKCACAAATTCA--
-----CACATTCCAT
 C G T A A C G T A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T

PB0096.1_Zfp187_1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--WKKCACAAATTCA
TTATGTACTAATAA-
 A C G T A C G T C G T A A C G T A C T G A G T C C G T A A G T C C G T A C G T A C G T A A C G T A C G T A G T C C G T A
A G C T G A C T T C G A G A C T C T A G C G A T C T G A A G T C A G C T G C T A C G T A C G A T C G T A G T C A A C G T