Information for 1-CTAATGAACT (Motif 6)

A T G C A C G T C G T A C T G A C A G T A C T G C G T A T G C A A G T C C A G T
Reverse Opposite:
G T C A C T A G A C G T A C G T A G T C G C T A A G C T A C G T T G C A A T C G
p-value:1e-10
log p-value:-2.357e+01
Information Content per bp:1.834
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.51%
Number of Background Sequences with motif123.5
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets46.5 +/- 22.7bp
Average Position of motif in Background49.3 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F2/MA0793.1/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CTAATGAACT
NTAATGAGCT
 A T G C A C G T C G T A C T G A C A G T A C T G C G T A T G C A A G T C C A G T
C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

EMX1/MA0612.1/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTAATGAACT
CCTAATTACC-
 A C G T A T G C A C G T C G T A C T G A C A G T A C T G C G T A T G C A A G T C C A G T
T G A C A G T C G A C T T C G A C G T A C G A T C A G T C T G A T A G C A G T C A C G T

PH0074.1_Hoxd1/Jaspar

Match Rank:3
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CTAATGAACT---
TAAACTAATTAGCTGTA
 A C G T A C G T A C G T A C G T A T G C A C G T C G T A C T G A C A G T A C T G C G T A T G C A A G T C C A G T A C G T A C G T A C G T
C G A T T C G A G C T A T C A G A G T C G A C T T G C A C G T A C G A T A C G T C T G A T C A G A G T C A C G T A C T G C A G T G C T A

PH0154.1_Prrx1/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CTAATGAACT---
GTAACTAATTAACTACT
 A C G T A C G T A C G T A C G T A T G C A C G T C G T A C T G A C A G T A C T G C G T A T G C A A G T C C A G T A C G T A C G T A C G T
T A C G A C G T G T C A T C G A A G T C G A C T T C G A C T G A A G C T A G C T C T G A T C G A A G T C C A G T C T G A T A G C A G C T

LHX2/MA0700.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTAATGAACT
ACTAATTAAC-
 A C G T A T G C A C G T C G T A C T G A C A G T A C T G C G T A T G C A A G T C C A G T
T C G A A G T C G A C T G T C A C T G A A C G T A C G T C T G A C T G A A T G C A C G T

EVX2/MA0888.1/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTAATGAACT
NNTAATTANN-
 A C G T A T G C A C G T C G T A C T G A C A G T A C T G C G T A T G C A A G T C C A G T
T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C A C G T

PH0050.1_Hoxa3/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTAATGAACT---
ACTAATTANCNCNA
 A C G T A T G C A C G T C G T A C T G A C A G T A C T G C G T A T G C A A G T C C A G T A C G T A C G T A C G T
T C G A A G T C G A C T G T C A C G T A A C G T A C G T C T G A T A G C A G T C C A G T A G T C T C G A G T C A

mix-a/MA0621.1/Jaspar

Match Rank:8
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTAATGAACT
NCTAATTAANN
 A C G T A T G C A C G T C G T A C T G A C A G T A C T G C G T A T G C A A G T C C A G T
G T C A G A T C A C G T C G T A C G T A A C G T A C G T C G T A C T G A G A C T A C G T

MEOX1/MA0661.1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CTAATGAACT
GCTAATTAAC-
 A C G T A T G C A C G T C G T A C T G A C A G T A C T G C G T A T G C A A G T C C A G T
T C A G T A G C G A C T T G C A C G T A G A C T A C G T C T G A G T C A T A G C A C G T

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTAATGAACT
YTAATTAVHT
 A T G C A C G T C G T A C T G A C A G T A C T G C G T A T G C A A G T C C A G T
A G T C G A C T T C G A C G T A A C G T A C G T C T G A T C G A G C A T G C A T