Information for 2-CTAATCTGMAGGCCAM (Motif 4)

A G T C C A G T C T G A C G T A C G A T G A T C C G A T A C T G T G C A C G T A A C T G C T A G T A G C G A T C G T C A G T C A
Reverse Opposite:
C A G T C A G T C A T G A T C G A G T C A G T C A C G T A C G T G T A C C G T A C A T G C G T A A C G T A G C T G T C A T A C G
p-value:1e-11
log p-value:-2.692e+01
Information Content per bp:1.720
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets18.6 +/- 7.7bp
Average Position of motif in Background60.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou2f3/MA0627.1/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTAATCTGMAGGCCAM
TNTAATTTGCATACNA-
 A C G T A G T C C A G T C T G A C G T A C G A T G A T C C G A T A C T G T G C A C G T A A C T G C T A G T A G C G A T C G T C A G T C A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTAATCTGMAGGCCAM
TNTAATTTGCATACNA-
 A C G T A G T C C A G T C T G A C G T A C G A T G A T C C G A T A C T G T G C A C G T A A C T G C T A G T A G C G A T C G T C A G T C A
A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTAATCTGMAGGCCAM
TNTAATTTGCATANNN-
 A C G T A G T C C A G T C T G A C G T A C G A T G A T C C G A T A C T G T G C A C G T A A C T G C T A G T A G C G A T C G T C A G T C A
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CTAATCTGMAGGCCAM
YTAATCCY--------
 A G T C C A G T C T G A C G T A C G A T G A T C C G A T A C T G T G C A C G T A A C T G C T A G T A G C G A T C G T C A G T C A
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTAATCTGMAGGCCAM-
--AAGTTCAAGGTCAGC
 A G T C C A G T C T G A C G T A C G A T G A T C C G A T A C T G T G C A C G T A A C T G C T A G T A G C G A T C G T C A G T C A A C G T
A C G T A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

GSC2/MA0891.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTAATCTGMAGGCCAM
CCTAATCCGC-------
 A C G T A G T C C A G T C T G A C G T A C G A T G A T C C G A T A C T G T G C A C G T A A C T G C T A G T A G C G A T C G T C A G T C A
T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTAATCTGMAGGCCAM
TTAATCCG--------
 A G T C C A G T C T G A C G T A C G A T G A T C C G A T A C T G T G C A C G T A A C T G C T A G T A G C G A T C G T C A G T C A
G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTAATCTGMAGGCCAM
TTAATCCT--------
 A G T C C A G T C T G A C G T A C G A T G A T C C G A T A C T G T G C A C G T A A C T G C T A G T A G C G A T C G T C A G T C A
G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTAATCTGMAGGCCAM--
-AAATTTGCTGACTTAGA
 A G T C C A G T C T G A C G T A C G A T G A T C C G A T A C T G T G C A C G T A A C T G C T A G T A G C G A T C G T C A G T C A A C G T A C G T
A C G T G C T A C T G A C G T A G C A T C A G T G C A T C A T G G T A C G C A T C A T G C G T A A G T C C G A T G C A T C T G A C T A G G T A C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTAATCTGMAGGCCAM
GCTAATCC---------
 A C G T A G T C C A G T C T G A C G T A C G A T G A T C C G A T A C T G T G C A C G T A A C T G C T A G T A G C G A T C G T C A G T C A
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T