Information for 9-AKAGGDCAKGARG (Motif 21)

T C G A A C G T C G T A C T A G A C T G C G T A T G A C C G T A C A T G A T C G G T C A C T G A C A T G
Reverse Opposite:
G T A C A G C T C A G T T A G C G T A C C G A T A C T G G C A T T A G C G A T C C G A T T G C A A G C T
p-value:1e-7
log p-value:-1.725e+01
Information Content per bp:1.615
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif4.69%
Number of Background Sequences with motif680.0
Percentage of Background Sequences with motif1.37%
Average Position of motif in Targets43.7 +/- 27.2bp
Average Position of motif in Background48.7 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AKAGGDCAKGARG
TRAGGTCA-----
 T C G A A C G T C G T A C T A G A C T G C G T A T G A C C G T A C A T G A T C G G T C A C T G A C A T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AKAGGDCAKGARG
--AGGTCA-----
 T C G A A C G T C G T A C T A G A C T G C G T A T G A C C G T A C A T G A T C G G T C A C T G A C A T G
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AKAGGDCAKGARG
CAAAGGTCAAGGG-
 A C G T T C G A A C G T C G T A C T A G A C T G C G T A T G A C C G T A C A T G A T C G G T C A C T G A C A T G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AKAGGDCAKGARG
AGRGGTCA-----
 T C G A A C G T C G T A C T A G A C T G C G T A T G A C C G T A C A T G A T C G G T C A C T G A C A T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----AKAGGDCAKGARG
TCTCAAAGGTCACGAG-
 A C G T A C G T A C G T A C G T T C G A A C G T C G T A C T A G A C T G C G T A T G A C C G T A C A T G A T C G G T C A C T G A C A T G
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G A C G T

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AKAGGDCAKGARG
ATCAAGGTCA-----
 A C G T A C G T T C G A A C G T C G T A C T A G A C T G C G T A T G A C C G T A C A T G A T C G G T C A C T G A C A T G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AKAGGDCAKGARG---
-GAGGTCAAAAGGTCA
 T C G A A C G T C G T A C T A G A C T G C G T A T G A C C G T A C A T G A T C G G T C A C T G A C A T G A C G T A C G T A C G T
A C G T T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AKAGGDCAKGARG
CAAAGGTCAG----
 A C G T T C G A A C G T C G T A C T A G A C T G C G T A T G A C C G T A C A T G A T C G G T C A C T G A C A T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AKAGGDCAKGARG
TCTCAAAGGTCACCTG-
 A C G T A C G T A C G T A C G T T C G A A C G T C G T A C T A G A C T G C G T A T G A C C G T A C A T G A T C G G T C A C T G A C A T G
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G A C G T

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AKAGGDCAKGARG-------
NGAGGTCANNGAGTTCANNN
 T C G A A C G T C G T A C T A G A C T G C G T A T G A C C G T A C A T G A T C G G T C A C T G A C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G