Information for 1-AMACARACTCTCC (Motif 1)

C G T A G T C A C G T A A G T C C G T A T C G A C G T A A G T C A C G T A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G C T A G C G T A A C T G G T C A C T A G A C G T A G C T A C G T A C T G A C G T C A G T A C G T
p-value:1e-13
log p-value:-3.185e+01
Information Content per bp:1.910
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets56.4 +/- 22.9bp
Average Position of motif in Background28.9 +/- 10.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AMACARACTCTCC
AGCAACAGCCGCACC
 A C G T A C G T C G T A G T C A C G T A A G T C C G T A T C G A C G T A A G T C A C G T A G T C A C G T A G T C A G T C
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AMACARACTCTCC--
GVACAGNMTGTYCTB
 C G T A G T C A C G T A A G T C C G T A T C G A C G T A A G T C A C G T A G T C A C G T A G T C A G T C A C G T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

PB0016.1_Foxj1_1/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AMACARACTCTCC
AAAGTAAACAAAAATT--
 A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A A G T C C G T A T C G A C G T A A G T C A C G T A G T C A C G T A G T C A G T C
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T A C G T A C G T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:AMACARACTCTCC--
GRACAGWMTGTYCTB
 C G T A G T C A C G T A A G T C C G T A T C G A C G T A A G T C A C G T A G T C A C G T A G T C A G T C A C G T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AMACARACTCTCC----
NTGACTCANTTTTTCCANTN
 A C G T A C G T A C G T C G T A G T C A C G T A A G T C C G T A T C G A C G T A A G T C A C G T A G T C A C G T A G T C A G T C A C G T A C G T A C G T A C G T
T C G A G C A T A C T G C G T A A T G C G C A T G T A C C G T A A G C T G C A T A G C T A G C T G A C T A G C T A G T C A G T C G C T A A G C T G A C T A T G C

Foxj3/MA0851.1/Jaspar

Match Rank:6
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------AMACARACTCTCC
AAAAAGTAAACAAACAC---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A A G T C C G T A T C G A C G T A A G T C A C G T A G T C A C G T A G T C A G T C
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C A C G T A C G T A C G T

PB0017.1_Foxj3_1/Jaspar

Match Rank:7
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------AMACARACTCTCC
AAAAAGTAAACAAACAC---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A A G T C C G T A T C G A C G T A A G T C A C G T A G T C A C G T A G T C A G T C
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AMACARACTCTCC
AAACAAACATTC-
 C G T A G T C A C G T A A G T C C G T A T C G A C G T A A G T C A C G T A G T C A C G T A G T C A G T C
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AMACARACTCTCC
AAGAACATWHTGTTC
 A C G T A C G T C G T A G T C A C G T A A G T C C G T A T C G A C G T A A G T C A C G T A G T C A C G T A G T C A G T C
C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

FOXP1/MA0481.1/Jaspar

Match Rank:10
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------AMACARACTCTCC
CAAAAGTAAACAAAG-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A A G T C C G T A T C G A C G T A A G T C A C G T A G T C A C G T A G T C A G T C
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G A C G T A C G T A C G T A C G T A C G T