Information for 23-CCATGCATCCTCCAAG (Motif 44)

A G T C A G T C G T C A A C G T C T A G A G T C C G T A A G C T A G T C G T A C A C G T G T A C A G T C C G T A C G T A A T C G
Reverse Opposite:
A T G C C G A T A C G T A C T G A C T G C G T A A C T G A C T G C T G A A C G T A C T G A G T C C G T A A C G T A C T G A C T G
p-value:1e-6
log p-value:-1.458e+01
Information Content per bp:1.910
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.5 +/- 26.2bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCATGCATCCTCCAAG
TCATGAATWATTCAT-
 A G T C A G T C G T C A A C G T C T A G A G T C C G T A A G C T A G T C G T A C A C G T G T A C A G T C C G T A C G T A A T C G
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCATGCATCCTCCAAG
WYATGCATWATGCAT-
 A G T C A G T C G T C A A C G T C T A G A G T C C G T A A G C T A G T C G T A C A C G T G T A C A G T C C G T A C G T A A T C G
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CCATGCATCCTCCAAG
--ATGCATAATTCA--
 A G T C A G T C G T C A A C G T C T A G A G T C C G T A A G C T A G T C G T A C A C G T G T A C A G T C C G T A C G T A A T C G
A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCATGCATCCTCCAAG
GYCATCMATCAT-----
 A C G T A G T C A G T C G T C A A C G T C T A G A G T C C G T A A G C T A G T C G T A C A C G T G T A C A G T C C G T A C G T A A T C G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CCATGCATCCTCCAAG
GCCATAAATCA------
 A C G T A G T C A G T C G T C A A C G T C T A G A G T C C G T A A G C T A G T C G T A C A C G T G T A C A G T C C G T A C G T A A T C G
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.50
Offset:-5
Orientation:reverse strand
Alignment:-----CCATGCATCCTCCAAG----
AACTCCTAYTCATCCTTCAAAACCC
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T C A A C G T C T A G A G T C C G T A A G C T A G T C G T A C A C G T G T A C A G T C C G T A C G T A A T C G A C G T A C G T A C G T A C G T
C G T A C T G A A G T C A C G T A G T C A G T C A C G T C G T A A G C T C G A T A G T C C G T A G A C T A G T C A G T C G A C T C A G T A G T C G T C A C T G A C T G A C T G A G T A C A G T C A G T C

ATF4/MA0833.1/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CCATGCATCCTCCAAG
TATTGCATCATCC---
 A G T C A G T C G T C A A C G T C T A G A G T C C G T A A G C T A G T C G T A C A C G T G T A C A G T C C G T A C G T A A T C G
A C G T T C G A C G A T C A G T C T A G G T A C T C G A C G A T G A T C G T C A A C G T G T A C G A T C A C G T A C G T A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:8
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--CCATGCATCCTCCAAG
GGCCATAAATCA------
 A C G T A C G T A G T C A G T C G T C A A C G T C T A G A G T C C G T A A G C T A G T C G T A C A C G T G T A C A G T C C G T A C G T A A T C G
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

ZNF263/MA0528.1/Jaspar

Match Rank:9
Score:0.49
Offset:-8
Orientation:reverse strand
Alignment:--------CCATGCATCCTCCAAG
TCCTCCTCCCCCTCCTCCTCC---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T C A A C G T C T A G A G T C C G T A A G C T A G T C G T A C A C G T G T A C A G T C C G T A C G T A A T C G
G A C T G A T C G A T C G A C T G A T C G A T C G A C T A G T C G A T C G A T C G A T C A G T C A G C T A G T C G T A C C G A T A T G C G T A C G A C T A G T C G A T C A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CCATGCATCCTCCAAG
--ATGMATATDC----
 A G T C A G T C G T C A A C G T C T A G A G T C C G T A A G C T A G T C G T A C A C G T G T A C A G T C C G T A C G T A A T C G
A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T