Information for 7-TGCCAGTAGTRCA (Motif 7)

A C G T A C T G A G T C A G T C C G T A A C T G A C G T C T G A A C T G A C G T C T A G A G T C C G T A
Reverse Opposite:
A C G T C T A G G A C T T C G A A G T C A G C T T C G A A G T C C G A T A C T G A C T G G T A C C G T A
p-value:1e-11
log p-value:-2.745e+01
Information Content per bp:1.829
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.2 +/- 24.8bp
Average Position of motif in Background58.1 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGTAGTRCA
CTGCCCGCA-----
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T C T G A A C T G A C G T C T A G A G T C C G T A
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:2
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TGCCAGTAGTRCA
NNNNTGCCAGTGATTG-
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T C T G A A C T G A C G T C T A G A G T C C G T A
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGCCAGTAGTRCA
TGCCAA-------
 A C G T A C T G A G T C A G T C C G T A A C T G A C G T C T G A A C T G A C G T C T A G A G T C C G T A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGTAGTRCA
CGTGCCAAG------
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T C T G A A C T G A C G T C T A G A G T C C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGTAGTRCA
TTGCCAAG------
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T C T G A A C T G A C G T C T A G A G T C C G T A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0050.1_Osr1_1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGTAGTRCA-
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T C T G A A C T G A C G T C T A G A G T C C G T A A C G T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGCCAGTAGTRCA
TGCCCTNAGGGCA
 A C G T A C T G A G T C A G T C C G T A A C T G A C G T C T G A A C T G A C G T C T A G A G T C C G T A
G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGTAGTRCA
ATGCCAACC-----
 A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T C T G A A C T G A C G T C T A G A G T C C G T A
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGCCAGTAGTRCA
TGCCCNNAGGGCA
 A C G T A C T G A G T C A G T C C G T A A C T G A C G T C T G A A C T G A C G T C T A G A G T C C G T A
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGTAGTRCA
GGTGCCAAGT-----
 A C G T A C G T A C G T A C T G A G T C A G T C C G T A A C T G A C G T C T G A A C T G A C G T C T A G A G T C C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T