Information for 3-GCGCCCCSCGCGCCCC (Motif 3)

A C T G A G T C A T C G A G T C A T G C A G T C A G T C A T G C T A G C A C T G A T G C A C T G A G T C A G T C A G T C A G T C
Reverse Opposite:
T C A G A C T G A C T G A C T G A G T C A T C G A G T C A C T G A T C G A C T G T A C G A T C G A C T G A T G C A C T G T A G C
p-value:1e-16
log p-value:-3.771e+01
Information Content per bp:1.827
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.7 +/- 28.0bp
Average Position of motif in Background79.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.63
Offset:6
Orientation:forward strand
Alignment:GCGCCCCSCGCGCCCC
------AGCGCGCC--
A C T G A G T C A T C G A G T C A T G C A G T C A G T C A T G C T A G C A C T G A T G C A C T G A G T C A G T C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T

PLAG1/MA0163.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCGCCCCSCGCGCCCC
--CCCCCTTGGGCCCC
A C T G A G T C A T C G A G T C A T G C A G T C A G T C A T G C T A G C A C T G A T G C A C T G A G T C A G T C A G T C A G T C
A C G T A C G T A G T C G T A C A G T C A G T C G A T C A C G T C G A T C A T G T C A G A T C G G T A C A G T C G A T C A G T C

EGR1/MA0162.2/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCGCCCCSCGCGCCCC
CCCCCGCCCCCGCC--
A C T G A G T C A T C G A G T C A T G C A G T C A G T C A T G C T A G C A C T G A T G C A C T G A G T C A G T C A G T C A G T C
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCGCCCCSCGCGCCCC
NNGCNCTGCGCGGC--
A C T G A G T C A T C G A G T C A T G C A G T C A G T C A T G C T A G C A C T G A T G C A C T G A G T C A G T C A G T C A G T C
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C A C G T A C G T

PB0009.1_E2F3_1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCGCCCCSCGCGCCCC---
----ANCGCGCGCCCTTNN
A C T G A G T C A T C G A G T C A T G C A G T C A G T C A T G C T A G C A C T G A T G C A C T G A G T C A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCGCCCCSCGCGCCCC
-TGCCCTNAGGGCA--
A C T G A G T C A T C G A G T C A T G C A G T C A G T C A T G C T A G C A C T G A T G C A C T G A G T C A G T C A G T C A G T C
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCGCCCCSCGCGCCCC---
----NTCGCGCGCCTTNNN
A C T G A G T C A T C G A G T C A T G C A G T C A G T C A T G C T A G C A C T G A T G C A C T G A G T C A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCGCCCCSCGCGCCCC
-TGCCCNNAGGGCA--
A C T G A G T C A T C G A G T C A T G C A G T C A G T C A T G C T A G C A C T G A T G C A C T G A G T C A G T C A G T C A G T C
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GCGCCCCSCGCGCCCC
GGTCCCGCCCCCTTCTC---
A C G T A C G T A C G T A C G T A C T G A G T C A T C G A G T C A T G C A G T C A G T C A T G C T A G C A C T G A T G C A C T G A G T C A G T C A G T C A G T C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCGCCCCSCGCGCCCC---
---NNNGGGGCGCCCCCNN
A C T G A G T C A T C G A G T C A T G C A G T C A G T C A T G C T A G C A C T G A T G C A C T G A G T C A G T C A G T C A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A