Information for 10-TCTGGCATCCCCTAGA (Motif 20)

A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G C T A G T C A G T C A G T C A G T C G C A T C G T A A C T G C G T A
Reverse Opposite:
C G A T A G T C C G A T C G T A A C T G A C T G A C T G A C T G C T G A C G A T A C T G G T A C A G T C C G T A A C T G C G T A
p-value:1e-8
log p-value:-1.985e+01
Information Content per bp:1.918
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets69.2 +/- 14.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCTGGCATCCCCTAGA
GGTCTGGCAT--------
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G C T A G T C A G T C A G T C A G T C G C A T C G T A A C T G C G T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TCTGGCATCCCCTAGA----
---NTCNTCCCCTATNNGNN
 A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G C T A G T C A G T C A G T C A G T C G C A T C G T A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCTGGCATCCCCTAGA
TGTCTGDCACCT------
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G C T A G T C A G T C A G T C A G T C G C A T C G T A A C T G C G T A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

MZF1/MA0056.1/Jaspar

Match Rank:4
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:TCTGGCATCCCCTAGA
-------TCCCCA---
 A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G C T A G T C A G T C A G T C A G T C G C A T C G T A A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TCTGGCATCCCCTAGA
NNNNGGTACCCCCCANN
 A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G C T A G T C A G T C A G T C A G T C G C A T C G T A A C T G C G T A
G C T A C T G A C T A G C A T G C A T G C A T G G A C T C G T A A G T C T A G C A G T C A G T C G A T C G A T C C G T A T A C G G A T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---TCTGGCATCCCCTAGA
CTGTCTGTCACCT------
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G C T A G T C A G T C A G T C A G T C G C A T C G T A A C T G C G T A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TCTGGCATCCCCTAGA-
-CCGTCTTCCCCCTCAC
 A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G C T A G T C A G T C A G T C A G T C G C A T C G T A A C T G C G T A A C G T
A C G T T G A C A G T C C A T G A C G T G A T C G C A T G A C T G A T C A G T C A T G C G T A C G A T C A G C T T A G C T G C A G A T C

PB0098.1_Zfp410_1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCTGGCATCCCCTAGA-
NNNTCCATCCCATAANN
 A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G C T A G T C A G T C A G T C A G T C G C A T C G T A A C T G C G T A A C G T
A C G T G C A T G T C A A C G T T G A C G A T C G C T A A G C T G A T C G A T C G A T C C G T A C A G T G C T A G T C A A G C T G C T A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TCTGGCATCCCCTAGA
NTTGGCANN-------
 A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G C T A G T C A G T C A G T C A G T C G C A T C G T A A C T G C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TCTGGCATCCCCTAGA
-TTGGCA---------
 A C G T A G T C A C G T A C T G A C T G A G T C C G T A A G C T A G T C A G T C A G T C A G T C G C A T C G T A A C T G C G T A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T