Information for 6-MMTTRAWACAGTCWGY (Motif 9)

T G C A G T C A G C A T A C G T C T G A G T C A C G T A T G C A T G A C C G T A A T C G A C G T T A G C C G T A C T A G A G T C
Reverse Opposite:
C T A G A G T C C G A T A C T G C G T A T A G C A C G T A C T G A C G T G C A T C A G T G A C T G T C A C G T A A C G T A C G T
p-value:1e-11
log p-value:-2.613e+01
Information Content per bp:1.620
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.26%
Number of Background Sequences with motif111.7
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets40.4 +/- 22.8bp
Average Position of motif in Background49.6 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:MMTTRAWACAGTCWGY
-----MRSCACTYAA-
 T G C A G T C A G C A T A C G T C T G A G T C A C G T A T G C A T G A C C G T A A T C G A C G T T A G C C G T A C T A G A G T C
A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:MMTTRAWACAGTCWGY
-NTTGATACATT----
 T G C A G T C A G C A T A C G T C T G A G T C A C G T A T G C A T G A C C G T A A T C G A C G T T A G C C G T A C T A G A G T C
A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.55
Offset:5
Orientation:forward strand
Alignment:MMTTRAWACAGTCWGY
-----AAGCACTTAA-
 T G C A G T C A G C A T A C G T C T G A G T C A C G T A T G C A T G A C C G T A A T C G A C G T T A G C C G T A C T A G A G T C
A C G T A C G T A C G T A C G T A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:forward strand
Alignment:MMTTRAWACAGTCWGY
AAATGGACCAATCAG-
 T G C A G T C A G C A T A C G T C T G A G T C A C G T A T G C A T G A C C G T A A T C G A C G T T A G C C G T A C T A G A G T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

Sox5/MA0087.1/Jaspar

Match Rank:5
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:MMTTRAWACAGTCWGY
-----NAACAAT----
 T G C A G T C A G C A T A C G T C T G A G T C A C G T A T G C A T G A C C G T A A T C G A C G T T A G C C G T A C T A G A G T C
A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:MMTTRAWACAGTCWGY-
-TTTAGAACAATAAAAT
 T G C A G T C A G C A T A C G T C T G A G T C A C G T A T G C A T G A C C G T A A T C G A C G T T A G C C G T A C T A G A G T C A C G T
A C G T C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:7
Score:0.53
Offset:5
Orientation:forward strand
Alignment:MMTTRAWACAGTCWGY
-----AGCCACTCAAG
 T G C A G T C A G C A T A C G T C T G A G T C A C G T A T G C A T G A C C G T A A T C G A C G T T A G C C G T A C T A G A G T C
A C G T A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PB0062.1_Sox12_1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:MMTTRAWACAGTCWGY
NTTNAGAACAATTA--
 T G C A G T C A G C A T A C G T C T G A G T C A C G T A T G C A T G A C C G T A A T C G A C G T T A G C C G T A C T A G A G T C
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:forward strand
Alignment:MMTTRAWACAGTCWGY--
---AAGAACATWHTGTTC
 T G C A G T C A G C A T A C G T C T G A G T C A C G T A T G C A T G A C C G T A A T C G A C G T T A G C C G T A C T A G A G T C A C G T A C G T
A C G T A C G T A C G T C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.51
Offset:5
Orientation:forward strand
Alignment:MMTTRAWACAGTCWGY
-----AASCACTCAA-
 T G C A G T C A G C A T A C G T C T G A G T C A C G T A T G C A T G A C C G T A A T C G A C G T T A G C C G T A C T A G A G T C
A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T