Information for 25-AGGGCAGGCAGAGGGC (Motif 38)

C T G A C T A G C T A G A T C G T A G C C T G A T C A G C A T G A G T C C T G A T A C G T C G A C A T G T A C G T A C G A G T C
Reverse Opposite:
T C A G A T G C A G T C G T A C A G C T A G T C A G C T T C A G G T A C A G T C G A C T A T C G T A G C A G T C A G T C A G C T
p-value:1e-6
log p-value:-1.410e+01
Information Content per bp:1.675
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif62.5
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets49.5 +/- 23.0bp
Average Position of motif in Background45.7 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGGGCAGGCAGAGGGC--
RGGTCADNNAGAGGTCAV
 C T G A C T A G C T A G A T C G T A G C C T G A T C A G C A T G A G T C C T G A T A C G T C G A C A T G T A C G T A C G A G T C A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGGGCAGGCAGAGGGC-
AGGTCAACTAAAGGTCA
 C T G A C T A G C T A G A T C G T A G C C T G A T C A G C A T G A G T C C T G A T A C G T C G A C A T G T A C G T A C G A G T C A C G T
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

RARA(var.2)/MA0730.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGGGCAGGCAGAGGGC-
AGGTCATGCAAAGGTCA
 C T G A C T A G C T A G A T C G T A G C C T G A T C A G C A T G A G T C C T G A T A C G T C G A C A T G T A C G T A C G A G T C A C G T
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

RARA::RXRA/MA0159.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGGCAGGCAGAGGGC-
AGGTCACGGAGAGGTCA
 C T G A C T A G C T A G A T C G T A G C C T G A T C A G C A T G A G T C C T G A T A C G T C G A C A T G T A C G T A C G A G T C A C G T
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:AGGGCAGGCAGAGGGC
------AACAGATGGC
 C T G A C T A G C T A G A T C G T A G C C T G A T C A G C A T G A G T C C T G A T A C G T C G A C A T G T A C G T A C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:AGGGCAGGCAGAGGGC-------
---GCCASCAGGGGGCGCYVNNG
 C T G A C T A G C T A G A T C G T A G C C T G A T C A G C A T G A G T C C T G A T A C G T C G A C A T G T A C G T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGGGCAGGCAGAGGGC----
-TGGCCACCAGGGGGCGCTA
 C T G A C T A G C T A G A T C G T A G C C T G A T C A G C A T G A G T C C T G A T A C G T C G A C A T G T A C G T A C G A G T C A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGGGCAGGCAGAGGGC-----
-TGGCCACCAGGTGGCACTNT
 C T G A C T A G C T A G A T C G T A G C C T G A T C A G C A T G A G T C C T G A T A C G T C G A C A T G T A C G T A C G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:9
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:AGGGCAGGCAGAGGGC
------AACAGATGGT
 C T G A C T A G C T A G A T C G T A G C C T G A T C A G C A T G A G T C C T G A T A C G T C G A C A T G T A C G T A C G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AGGGCAGGCAGAGGGC
TNNGGGCAG---------
 A C G T A C G T C T G A C T A G C T A G A T C G T A G C C T G A T C A G C A T G A G T C C T G A T A C G T C G A C A T G T A C G T A C G A G T C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T