Information for 5-ACAGGATCAS (Motif 37)

G T C A G A T C C T G A C T A G T C A G C T G A A C G T A T G C G C T A A T G C
Reverse Opposite:
T A C G C G A T T A C G C G T A G A C T A G T C A G T C A G C T C T A G C A G T
p-value:1e-6
log p-value:-1.421e+01
Information Content per bp:1.646
Number of Target Sequences with motif57.0
Percentage of Target Sequences with motif7.58%
Number of Background Sequences with motif1827.1
Percentage of Background Sequences with motif3.75%
Average Position of motif in Targets42.9 +/- 24.4bp
Average Position of motif in Background49.4 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:ACAGGATCAS
--NGGATTAN
 G T C A G A T C C T G A C T A G T C A G C T G A A C G T A T G C G C T A A T G C
A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:ACAGGATCAS
-NGGGATTA-
 G T C A G A T C C T G A C T A G T C A G C T G A A C G T A T G C G C T A A T G C
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ACAGGATCAS
--RGGATTAR
 G T C A G A T C C T G A C T A G T C A G C T G A A C G T A T G C G C T A A T G C
A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

Pitx1/MA0682.1/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:ACAGGATCAS
--GGGATTAA
 G T C A G A T C C T G A C T A G T C A G C T G A A C G T A T G C G C T A A T G C
A C G T A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A

OTX2/MA0712.1/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:ACAGGATCAS
--NGGATTAA
 G T C A G A T C C T G A C T A G T C A G C T G A A C G T A T G C G C T A A T G C
A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ACAGGATCAS-
-VRGGATTARN
 G T C A G A T C C T G A C T A G T C A G C T G A A C G T A T G C G C T A A T G C A C G T
A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:ACAGGATCAS-
---GGATTAGC
 G T C A G A T C C T G A C T A G T C A G C T G A A C G T A T G C G C T A A T G C A C G T
A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PITX3/MA0714.1/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ACAGGATCAS-
--GGGATTANN
 G T C A G A T C C T G A C T A G T C A G C T G A A C G T A T G C G C T A A T G C A C G T
A C G T A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

Dmbx1/MA0883.1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ACAGGATCAS----
TGAACCGGATTAATGAA
 A C G T A C G T A C G T G T C A G A T C C T G A C T A G T C A G C T G A A C G T A T G C G C T A A T G C A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A

PH0025.1_Dmbx1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---ACAGGATCAS----
TGAACCGGATTAATGAA
 A C G T A C G T A C G T G T C A G A T C C T G A C T A G T C A G C T G A A C G T A T G C G C T A A T G C A C G T A C G T A C G T A C G T
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A