Information for 18-AGAGGCCGTARAG (Motif 40)

G C T A A C T G C T G A A C T G A C T G G T A C G T A C T A C G C G A T C G T A C T G A G T C A T A C G
Reverse Opposite:
A T G C C A G T A G C T C G A T C G T A A G T C A C T G A C T G G T A C A G T C G A C T T G A C C G A T
p-value:1e-7
log p-value:-1.708e+01
Information Content per bp:1.642
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.86%
Number of Background Sequences with motif134.4
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets64.0 +/- 18.8bp
Average Position of motif in Background53.6 +/- 25.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AGAGGCCGTARAG--
---NGYCATAAAWCH
 G C T A A C T G C T G A A C T G A C T G G T A C G T A C T A C G C G A T C G T A C T G A G T C A T A C G A C G T A C G T
A C G T A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGAGGCCGTARAG---
TAAAGTCGTAAAACGT
 G C T A A C T G C T G A A C T G A C T G G T A C G T A C T A C G C G A T C G T A C T G A G T C A T A C G A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0067.1_Hoxc12/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGAGGCCGTARAG----
TTAGGTCGTAAAATTTC
 G C T A A C T G C T G A A C T G A C T G G T A C G T A C T A C G C G A T C G T A C T G A G T C A T A C G A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGAGGCCGTARAG---
TAAAGTCGTAAAATAG
 G C T A A C T G C T G A A C T G A C T G G T A C G T A C T A C G C G A T C G T A C T G A G T C A T A C G A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0077.1_Hoxd12/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGAGGCCGTARAG----
CAAGGTCGTAAAATCTT
 G C T A A C T G C T G A A C T G A C T G G T A C G T A C T A C G C G A T C G T A C T G A G T C A T A C G A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

HOXC12/MA0906.1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGAGGCCGTARAG-
---GGTCGTAAAAA
 G C T A A C T G C T G A A C T G A C T G G T A C G T A C T A C G C G A T C G T A C T G A G T C A T A C G A C G T
A C G T A C G T A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGAGGCCGTARAG
--AAGCCATAAAA
 G C T A A C T G C T G A A C T G A C T G G T A C G T A C T A C G C G A T C G T A C T G A G T C A T A C G
A C G T A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGAGGCCGTARAG---
TAAAGTCGTAAAACAT
 G C T A A C T G C T G A A C T G A C T G G T A C G T A C T A C G C G A T C G T A C T G A G T C A T A C G A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGAGGCCGTARAG----
TAAGGTCGTAAAATCCT
 G C T A A C T G C T G A A C T G A C T G G T A C G T A C T A C G C G A T C G T A C T G A G T C A T A C G A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

HOXC11/MA0651.1/Jaspar

Match Rank:10
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGAGGCCGTARAG-
---GGTCGTAAAAT
 G C T A A C T G C T G A A C T G A C T G G T A C G T A C T A C G C G A T C G T A C T G A G T C A T A C G A C G T
A C G T A C G T A C G T C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T