Information for 5-AGCTAGCTCA (Motif 34)

C T G A A C T G A G T C A C G T C G T A A T C G A G T C A C G T G T A C C T G A
Reverse Opposite:
G A C T C A T G C G T A A C T G A T G C C G A T C G T A C T A G A G T C A G C T
p-value:1e-8
log p-value:-1.964e+01
Information Content per bp:1.860
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif58.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets48.1 +/- 19.6bp
Average Position of motif in Background43.3 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCTAGCTCA-
TATAAGTAGGTCAA
 A C G T A C G T A C G T C T G A A C T G A G T C A C G T C G T A A T C G A G T C A C G T G T A C C T G A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGCTAGCTCA
AAYTAGGTCA
 C T G A A C T G A G T C A C G T C G T A A T C G A G T C A C G T G T A C C T G A
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

PB0154.1_Osr1_2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---AGCTAGCTCA---
ACATGCTACCTAATAC
 A C G T A C G T A C G T C T G A A C T G A G T C A C G T C G T A A T C G A G T C A C G T G T A C C T G A A C G T A C G T A C G T
C T G A G A T C G C T A G A C T T C A G G A T C A G C T C G T A G T A C G A T C G C A T T C G A G T C A C G A T G T C A T G A C

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGCTAGCTCA
----NGCTN-
 C T G A A C T G A G T C A C G T C G T A A T C G A G T C A C G T G T A C C T G A
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

PB0126.1_Gata5_2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGCTAGCTCA---
NNNCTGATATCTCNNNN
 A C G T A C G T A C G T A C G T C T G A A C T G A G T C A C G T C G T A A T C G A G T C A C G T G T A C C T G A A C G T A C G T A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

PB0155.1_Osr2_2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGCTAGCTCA---
ACTTGCTACCTACACC
 A C G T A C G T A C G T C T G A A C T G A G T C A C G T C G T A A T C G A G T C A C G T G T A C C T G A A C G T A C G T A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C

PH0167.1_Tcf1/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----AGCTAGCTCA---
CCTTAGTTAACTAAAAT
 A C G T A C G T A C G T A C G T C T G A A C T G A G T C A C G T C G T A A T C G A G T C A C G T G T A C C T G A A C G T A C G T A C G T
G A T C A T G C A C G T A G C T T C A G A T C G G A C T G C A T C G T A C G T A A T G C G A C T C T G A T G C A C G T A C T G A A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGCTAGCTCA
ATCAAGGTCA
 C T G A A C T G A G T C A C G T C G T A A T C G A G T C A C G T G T A C C T G A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

PB0081.1_Tcf1_1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----AGCTAGCTCA---
ACTTAGTTAACTAAAAA
 A C G T A C G T A C G T A C G T C T G A A C T G A G T C A C G T C G T A A T C G A G T C A C G T G T A C C T G A A C G T A C G T A C G T
T G C A G A T C A G C T G A C T T C G A C T A G G A C T C G A T G C T A C G T A A G T C G A C T C T G A T C G A C T G A G T C A C T G A

MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AGCTAGCTCA---
-GCTGASTCAGCA
 C T G A A C T G A G T C A C G T C G T A A T C G A G T C A C G T G T A C C T G A A C G T A C G T A C G T
A C G T T C A G T A G C G A C T C A T G C T G A A T C G G C A T G T A C C G T A A C T G T A G C T G C A