Information for 3-TCCTTTRAAAMTGCTT (Motif 4)

A G C T A T G C A G T C G C A T A C G T C G A T C T A G T C G A C G T A C T G A T G A C C G A T A T C G G A T C G A C T A C G T
Reverse Opposite:
C G T A C G T A C A T G A T G C C G T A A C T G G A C T A C G T A C G T A G T C C G T A C G T A C G T A C T A G A T C G C T G A
p-value:1e-13
log p-value:-3.001e+01
Information Content per bp:1.696
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.9 +/- 26.3bp
Average Position of motif in Background69.1 +/- 11.6bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:TCCTTTRAAAMTGCTT
---TTTGAAACCG---
 A G C T A T G C A G T C G C A T A C G T C G A T C T A G T C G A C G T A C T G A T G A C C G A T A T C G G A T C G A C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G A C G T A C G T A C G T

PB0042.1_Mafk_1/Jaspar

Match Rank:2
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TCCTTTRAAAMTGCTT----
-----TAAAAATGCTGACTT
 A G C T A T G C A G T C G C A T A C G T C G A T C T A G T C G A C G T A C T G A T G A C C G A T A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C G T A C G T A C G T A G C T A C G T A G A C T C A T G G T A C G C A T C A T G C G T A A G T C G C A T G A C T

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TCCTTTRAAAMTGCTT
-CCAATAAAAC-----
 A G C T A T G C A G T C G C A T A C G T C G A T C T A G T C G A C G T A C T G A T G A C C G A T A T C G G A T C G A C T A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TCCTTTRAAAMTGCTT
-CCTTTGATGT-----
 A G C T A T G C A G T C G C A T A C G T C G A T C T A G T C G A C G T A C T G A T G A C C G A T A T C G G A T C G A C T A C G T
A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TCCTTTRAAAMTGCTT
CCYMATAAAA------
 A G C T A T G C A G T C G C A T A C G T C G A T C T A G T C G A C G T A C T G A T G A C C G A T A T C G G A T C G A C T A C G T
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TCCTTTRAAAMTGCTT
-CCAATAAAAA-----
 A G C T A T G C A G T C G C A T A C G T C G A T C T A G T C G A C G T A C T G A T G A C C G A T A T C G G A T C G A C T A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T A C G T

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:TCCTTTRAAAMTGCTT-----
------AAAWWTGCTGACWWD
 A G C T A T G C A G T C G C A T A C G T C G A T C T A G T C G A C G T A C T G A T G A C C G A T A T C G G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G T A C G T A G C T A G C A T G C A T T C A G G T A C G C A T C A T G C G T A A T G C G C A T G C A T C A T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TCCTTTRAAAMTGCTT
NCYAATAAAA------
 A G C T A T G C A G T C G C A T A C G T C G A T C T A G T C G A C G T A C T G A T G A C C G A T A T C G G A T C G A C T A C G T
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:TCCTTTRAAAMTGCTT
-CCTTTGAWGT-----
 A G C T A T G C A G T C G C A T A C G T C G A T C T A G T C G A C G T A C T G A T G A C C G A T A T C G G A T C G A C T A C G T
A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TCCTTTRAAAMTGCTT
-CCAATAAAAA-----
 A G C T A T G C A G T C G C A T A C G T C G A T C T A G T C G A C G T A C T G A T G A C C G A T A T C G G A T C G A C T A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T A C G T