Information for 9-CTTTTTAAAA (Motif 12)

A G T C A G C T A C G T C G A T C G A T C G A T G T C A C G T A C G T A C T G A
Reverse Opposite:
A G C T C G A T A C G T A C G T G C T A C G T A C G T A T G C A C T G A T C A G
p-value:1e-5
log p-value:-1.266e+01
Information Content per bp:1.839
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif356.2
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets47.7 +/- 33.6bp
Average Position of motif in Background48.7 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0187.1_Tcf7_2/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTTTTTAAAA----
CCGTATTATAAACAA
 A C G T A G T C A G C T A C G T C G A T C G A T C G A T G T C A C G T A C G T A C T G A A C G T A C G T A C G T A C G T
G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTTTTTAAAA
-NATTCAAAT
 A G T C A G C T A C G T C G A T C G A T C G A T G T C A C G T A C G T A C T G A
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CTTTTTAAAA--
--TTTGAAACCG
 A G T C A G C T A C G T C G A T C G A T C G A T G T C A C G T A C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Arid3b/MA0601.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTTTTTAAAA-
NTAATTAATAT
 A G T C A G C T A C G T C G A T C G A T C G A T G T C A C G T A C G T A C T G A A C G T
A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTTTTTAAAA
NCYAATAAAA-
 A C G T A G T C A G C T A C G T C G A T C G A T C G A T G T C A C G T A C G T A C T G A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTTTTTAAAA
GCTCGTAAAAA
 A C G T A G T C A G C T A C G T C G A T C G A T C G A T G T C A C G T A C G T A C T G A
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTTTTTAAAA
NGCAATTAAA-
 A C G T A G T C A G C T A C G T C G A T C G A T C G A T G T C A C G T A C G T A C T G A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTTTTTAAAA--
CCTTTTATAGNC
 A G T C A G C T A C G T C G A T C G A T C G A T G T C A C G T A C G T A C T G A A C G T A C G T
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Arid3a/MA0151.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTTTTTAAAA
---ATTAAA-
 A G T C A G C T A C G T C G A T C G A T C G A T G T C A C G T A C G T A C T G A
A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T

PB0001.1_Arid3a_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTTTTTAAAA---
GGGTTTAATTAAAATTC
 A C G T A C G T A C G T A C G T A G T C A G C T A C G T C G A T C G A T C G A T G T C A C G T A C G T A C T G A A C G T A C G T A C G T
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C