Information for 2-TTGTGTTGCT (Motif 6)

A C G T A C G T T C A G A C G T A T C G A C G T A C G T A C T G G T A C C G A T
Reverse Opposite:
C G T A A C T G G T A C G T C A C G T A A T G C C G T A A G T C C G T A C G T A
p-value:1e-8
log p-value:-1.954e+01
Information Content per bp:1.863
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif6.72%
Number of Background Sequences with motif145.4
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets48.4 +/- 26.2bp
Average Position of motif in Background52.4 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTGTGTTGCT---
NNCTTTGTTTTGNTNNN
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T A T C G A C G T A C G T A C T G G T A C C G A T A C G T A C G T A C G T
G C A T A T G C G T A C C G A T G C A T C G A T C T A G C G A T C A G T C G A T A C G T C T A G C A T G G A C T T A C G G C A T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTGTGTTGCT--
NNTTTTGTTTTGATNT
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T A T C G A C G T A C G T A C T G G T A C C G A T A C G T A C G T
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:3
Score:0.64
Offset:-8
Orientation:forward strand
Alignment:--------TTGTGTTGCT--
ACTYKNATTCGTGNTACTTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T A T C G A C G T A C G T A C T G G T A C C G A T A C G T A C G T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TTGTGTTGCT----
--CTGTTGCTAGGS
 A C G T A C G T T C A G A C G T A T C G A C G T A C G T A C T G G T A C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTGTGTTGCT--
NNNNTTGTGTGCTTNN
 A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T A T C G A C G T A C G T A C T G G T A C C G A T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------TTGTGTTGCT
NNNCCATTGTGTNAN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T A T C G A C G T A C G T A C T G G T A C C G A T
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TTGTGTTGCT----------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T T C A G A C G T A T C G A C G T A C G T A C T G G T A C C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TTGTGTTGCT------
-NCCGTTGCTANGNGN
 A C G T A C G T T C A G A C G T A T C G A C G T A C G T A C T G G T A C C G A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TTGTGTTGCT-
-NATGTTGCAA
 A C G T A C G T T C A G A C G T A T C G A C G T A C G T A C T G G T A C C G A T A C G T
A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TTGTGTTGCT
CCATTGTTNY---
 A C G T A C G T A C G T A C G T A C G T T C A G A C G T A T C G A C G T A C G T A C T G G T A C C G A T
A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T A C G T