Information for 2-GTTCTTWATTTATGTT (Motif 3)

T C A G C G A T A C G T A T G C C A G T A G C T G C A T C G T A A G C T A C G T G A C T C G T A A C G T A C T G A G C T A G C T
Reverse Opposite:
C T G A C T G A T G A C C G T A A C G T C G T A G T C A C T G A A C G T C G T A C T G A G T C A A T C G G T C A C G T A A G T C
p-value:1e-10
log p-value:-2.441e+01
Information Content per bp:1.730
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.2 +/- 12.6bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU4F1/MA0790.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GTTCTTWATTTATGTT
ATGAATAATTAATG--
 T C A G C G A T A C G T A T G C C A G T A G C T G C A T C G T A A G C T A C G T G A C T C G T A A C G T A C T G A G C T A G C T
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G A C G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GTTCTTWATTTATGTT
ATGCATAATTAATGAG
 T C A G C G A T A C G T A T G C C A G T A G C T G C A T C G T A A G C T A C G T G A C T C G T A A C G T A C T G A G C T A G C T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

PH0091.1_Lhx1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GTTCTTWATTTATGTT
NNTTATTAATTAATNCN
 A C G T T C A G C G A T A C G T A T G C C A G T A G C T G C A T C G T A A G C T A C G T G A C T C G T A A C G T A C T G A G C T A G C T
T G A C C T G A C G A T C G A T C G T A G A C T G A C T T C G A C G T A C G A T A C G T C T G A C T G A G A C T G C A T A G T C A C T G

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTTCTTWATTTATGTT-
-NNANTGATTGATNTTN
 T C A G C G A T A C G T A T G C C A G T A G C T G C A T C G T A A G C T A C G T G A C T C G T A A C G T A C T G A G C T A G C T A C G T
A C G T G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GTTCTTWATTTATGTT
-----TGATTTATGGC
 T C A G C G A T A C G T A T G C C A G T A G C T G C A T C G T A A G C T A C G T G A C T C G T A A C G T A C T G A G C T A G C T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

PH0101.1_Lmx1b/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GTTCTTWATTTATGTT
AGTTTTTAATTAATTTG
 A C G T T C A G C G A T A C G T A T G C C A G T A G C T G C A T C G T A A G C T A C G T G A C T C G T A A C G T A C T G A G C T A G C T
T C G A C T A G C G A T C G A T G C A T A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G A T C G A T G A C T A C T G

PH0150.1_Pou4f3/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GTTCTTWATTTATGTT-
-GACNTCATTAATAANN
 T C A G C G A T A C G T A T G C C A G T A G C T G C A T C G T A A G C T A C G T G A C T C G T A A C G T A C T G A G C T A G C T A C G T
A C G T C T A G C T G A T G A C G A T C C A G T G T A C C G T A C G A T C G A T C G T A C T G A C G A T C G T A G T C A A G T C C G A T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GTTCTTWATTTATGTT
ATGAATWATTCATGA-
 T C A G C G A T A C G T A T G C C A G T A G C T G C A T C G T A A G C T A C G T G A C T C G T A A C G T A C T G A G C T A G C T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A A C G T

ONECUT3/MA0757.1/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GTTCTTWATTTATGTT--
----NTTATTGATTTTTT
 T C A G C G A T A C G T A T G C C A G T A G C T G C A T C G T A A G C T A C G T G A C T C G T A A C G T A C T G A G C T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T

PH0153.1_Prop1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTTCTTWATTTATGTT
GNNTNTTAATTAATNCN
 A C G T T C A G C G A T A C G T A T G C C A G T A G C T G C A T C G T A A G C T A C G T G A C T C G T A A C G T A C T G A G C T A G C T
C T A G G A C T G C A T G C A T G T A C G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A G C T A C G T A G T C A C T G