Information for 3-GAGAACAAAA (Motif 10)

C T A G C T G A C T A G G T C A C G T A A G T C C G T A G C T A G C T A C T G A
Reverse Opposite:
G A C T C G A T C G A T C G A T T C A G C G A T C A G T G A T C G A C T G A T C
p-value:1e-6
log p-value:-1.547e+01
Information Content per bp:1.698
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif12.90%
Number of Background Sequences with motif2294.9
Percentage of Background Sequences with motif4.62%
Average Position of motif in Targets49.4 +/- 23.8bp
Average Position of motif in Background49.3 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0071.1_Sox4_1/Jaspar

Match Rank:1
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--GAGAACAAAA-----
AGAAGAACAAAGGACTA
 A C G T A C G T C T A G C T G A C T A G G T C A C G T A A G T C C G T A G C T A G C T A C T G A A C G T A C G T A C G T A C G T A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GAGAACAAAA----
TTTAGAACAATAAAAT
 A C G T A C G T C T A G C T G A C T A G G T C A C G T A A G T C C G T A G C T A G C T A C T G A A C G T A C G T A C G T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GAGAACAAAA-----
ATAAGAACAAAGGACTA
 A C G T A C G T C T A G C T G A C T A G G T C A C G T A A G T C C G T A G C T A G C T A C T G A A C G T A C G T A C G T A C G T A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0065.1_Sox15_1/Jaspar

Match Rank:4
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GAGAACAAAA-----
TAGTGAACAATAGATTT
 A C G T A C G T C T A G C T G A C T A G G T C A C G T A A G T C C G T A G C T A G C T A C T G A A C G T A C G T A C G T A C G T A C G T
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:5
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GAGAACAAAA-
NTTNAGAACAATTA
 A C G T A C G T A C G T C T A G C T G A C T A G G T C A C G T A A G T C C G T A G C T A G C T A C T G A A C G T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GAGAACAAAA----
TTAAGAACAATAAATT
 A C G T A C G T C T A G C T G A C T A G G T C A C G T A A G T C C G T A G C T A G C T A C T G A A C G T A C G T A C G T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GAGAACAAAA-
-AAAACAAAGG
 C T A G C T G A C T A G G T C A C G T A A G T C C G T A G C T A G C T A C T G A A C G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GAGAACAAAA
---AACAAT-
 C T A G C T G A C T A G G T C A C G T A A G T C C G T A G C T A G C T A C T G A
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GAGAACAAAA-
-RNAACAATGG
 C T A G C T G A C T A G G T C A C G T A A G T C C G T A G C T A G C T A C T G A A C G T
A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:10
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GAGAACAAAA-
-GGAACAAAGR
 C T A G C T G A C T A G G T C A C G T A A G T C C G T A G C T A G C T A C T G A A C G T
A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G