Information for 4-AABTGGAATTTTGAGA (Motif 3)

G T C A G T C A A G T C A C G T A C T G A C T G T G C A C G T A A G C T A C G T A C G T A C G T A C T G G T C A A C T G C G T A
Reverse Opposite:
C G A T G T A C A C G T A G T C G T C A G T C A C G T A C T G A C G A T A C G T G T A C G T A C C G T A T C A G C A G T A C G T
p-value:1e-14
log p-value:-3.426e+01
Information Content per bp:1.751
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets40.5 +/- 26.0bp
Average Position of motif in Background46.7 +/- 11.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AABTGGAATTTTGAGA
NNATTGGACTTTNGNN-
 A C G T G T C A G T C A A G T C A C G T A C T G A C T G T G C A C G T A A G C T A C G T A C G T A C G T A C T G G T C A A C T G C G T A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:2
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AABTGGAATTTTGAGA--
NAGTTTCABTHTGACTNW
 G T C A G T C A A G T C A C G T A C T G A C T G T G C A C G T A A G C T A C G T A C G T A C G T A C T G G T C A A C T G C G T A A C G T A C G T
A G T C C T G A A T C G A G C T A G C T G A C T A G T C G C T A A C G T C G A T G C A T C G A T A T C G C G T A T A G C G C A T A T G C C G T A

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:3
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AABTGGAATTTTGAGA-
--CTTTCANTATGACTV
 G T C A G T C A A G T C A C G T A C T G A C T G T G C A C G T A A G C T A C G T A C G T A C G T A C T G G T C A A C T G C G T A A C G T
A C G T A C G T A T G C G A C T A G C T A G C T A G T C G C T A C A G T C G A T G C T A A C G T A C T G G C T A T A G C G C A T T G A C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:4
Score:0.49
Offset:9
Orientation:reverse strand
Alignment:AABTGGAATTTTGAGA---
---------TTTGAAACCG
 G T C A G T C A A G T C A C G T A C T G A C T G T G C A C G T A A G C T A C G T A C G T A C G T A C T G G T C A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

PB0169.1_Sox15_2/Jaspar

Match Rank:5
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--AABTGGAATTTTGAGA
TTGAATGAAATTCGA---
 A C G T A C G T G T C A G T C A A G T C A C G T A C T G A C T G T G C A C G T A A G C T A C G T A C G T A C G T A C T G G T C A A C T G C G T A
A C G T A C G T T C A G C T G A G T C A A G C T A C T G C G T A G T C A C T G A C A G T G A C T G A T C T A C G T C G A A C G T A C G T A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:6
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:AABTGGAATTTTGAGA---
---TNTAATTTGCATACNA
 G T C A G T C A A G T C A C G T A C T G A C T G T G C A C G T A A G C T A C G T A C G T A C G T A C T G G T C A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:AABTGGAATTTTGAGA---
---TNTAATTTGCATACNA
 G T C A G T C A A G T C A C G T A C T G A C T G T G C A C G T A A G C T A C G T A C G T A C G T A C T G G T C A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0144.1_Pou2f2/Jaspar

Match Rank:8
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:AABTGGAATTTTGAGA---
---TNTAATTTGCATANNN
 G T C A G T C A A G T C A C G T A C T G A C T G T G C A C G T A A G C T A C G T A C G T A C G T A C T G G T C A A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:AABTGGAATTTTGAGA-
-------CCTTTGATGT
 G T C A G T C A A G T C A C G T A C T G A C T G T G C A C G T A A G C T A C G T A C G T A C G T A C T G G T C A A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

PB0082.1_Tcf3_1/Jaspar

Match Rank:10
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:AABTGGAATTTTGAGA----
---NNTTCCTTTGATCTANA
 G T C A G T C A A G T C A C G T A C T G A C T G T G C A C G T A A G C T A C G T A C G T A C G T A C T G G T C A A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A