Information for 5-RGRAWTHWCC (Motif 18)

T C A G A T C G T C G A T C G A C G A T C A G T G A C T C G T A A G T C T A G C
Reverse Opposite:
A T C G T C A G C G A T C T G A G T C A C G T A A G C T A G C T T A G C A G T C
p-value:1e-8
log p-value:-2.010e+01
Information Content per bp:1.633
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.16%
Number of Background Sequences with motif381.5
Percentage of Background Sequences with motif0.80%
Average Position of motif in Targets51.2 +/- 29.0bp
Average Position of motif in Background50.6 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:RGRAWTHWCC
GGGAATTTCC
 T C A G A T C G T C G A T C G A C G A T C A G T G A C T C G T A A G T C T A G C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:RGRAWTHWCC
GGAAATCCCC
 T C A G A T C G T C G A T C G A C G A T C A G T G A C T C G T A A G T C T A G C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:RGRAWTHWCC
GGGAATTTCC
 T C A G A T C G T C G A T C G A C G A T C A G T G A C T C G T A A G T C T A G C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--RGRAWTHWCC
NGGGGATTTCCC
 A C G T A C G T T C A G A T C G T C G A T C G A C G A T C A G T G A C T C G T A A G T C T A G C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----RGRAWTHWCC-
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A C G T T C A G A T C G T C G A T C G A C G A T C A G T G A C T C G T A A G T C T A G C A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--RGRAWTHWCC-
AGGGGAATCCCCT
 A C G T A C G T T C A G A T C G T C G A T C G A C G A T C A G T G A C T C G T A A G T C T A G C A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

REL/MA0101.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:RGRAWTHWCC
GGAAANCCCC
 T C A G A T C G T C G A T C G A C G A T C A G T G A C T C G T A A G T C T A G C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

PH0121.1_Obox1/Jaspar

Match Rank:8
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----RGRAWTHWCC--
TTAAGGGGATTAACTAC
 A C G T A C G T A C G T A C G T A C G T T C A G A T C G T C G A T C G A C G A T C A G T G A C T C G T A A G T C T A G C A C G T A C G T
C A G T C G A T T C G A T C G A C T A G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C G T A G T A C C G A T G C T A A G T C

NFKB1/MA0105.4/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--RGRAWTHWCC-
AGGGGAATCCCCT
 A C G T A C G T T C A G A T C G T C G A T C G A C G A T C A G T G A C T C G T A A G T C T A G C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

PH0123.1_Obox3/Jaspar

Match Rank:10
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----RGRAWTHWCC--
TGAGGGGGATTAACTAT
 A C G T A C G T A C G T A C G T A C G T T C A G A T C G T C G A T C G A C G A T C A G T G A C T C G T A A G T C T A G C A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T