Information for 2-AGCAGGGGCHTTCCCG (Motif 12)

G T C A C T A G G T A C G T C A A T C G A C T G A C T G A T C G A G T C G A C T A C G T A C G T A G T C A G T C A G T C A T C G
Reverse Opposite:
T A G C A C T G C T A G A C T G C G T A C G T A C G T A A C T G A T G C A G T C A G T C A T G C A C G T C A T G A G T C A C G T
p-value:1e-10
log p-value:-2.396e+01
Information Content per bp:1.829
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.8 +/- 20.2bp
Average Position of motif in Background44.1 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.77
Offset:3
Orientation:forward strand
Alignment:AGCAGGGGCHTTCCCG
---NGGGGATTTCCC-
 G T C A C T A G G T A C G T C A A T C G A C T G A C T G A T C G A G T C G A C T A C G T A C G T A G T C A G T C A G T C A T C G
A C G T A C G T A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.77
Offset:4
Orientation:forward strand
Alignment:AGCAGGGGCHTTCCCG
----GGGGATTTCC--
 G T C A C T A G G T A C G T C A A T C G A C T G A C T G A T C G A G T C G A C T A C G T A C G T A G T C A G T C A G T C A T C G
A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.73
Offset:4
Orientation:forward strand
Alignment:AGCAGGGGCHTTCCCG
----GGGGATTTCC--
 G T C A C T A G G T A C G T C A A T C G A C T G A C T G A T C G A G T C G A C T A C G T A C G T A G T C A G T C A G T C A T C G
A C G T A C G T A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:AGCAGGGGCHTTCCCG-
-----GGGGATTCCCCC
 G T C A C T A G G T A C G T C A A T C G A C T G A C T G A T C G A G T C G A C T A C G T A C G T A G T C A G T C A G T C A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.70
Offset:4
Orientation:forward strand
Alignment:AGCAGGGGCHTTCCCG
----GGGAATTTCC--
 G T C A C T A G G T A C G T C A A T C G A C T G A C T G A T C G A G T C G A C T A C G T A C G T A G T C A G T C A G T C A T C G
A C G T A C G T A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:AGCAGGGGCHTTCCCG
---AGGGGAATCCCCT
 G T C A C T A G G T A C G T C A A T C G A C T G A C T G A T C G A G T C G A C T A C G T A C G T A G T C A G T C A G T C A T C G
A C G T A C G T A C G T T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:AGCAGGGGCHTTCCCG
---AGGGGAATCCCCT
 G T C A C T A G G T A C G T C A A T C G A C T G A C T G A T C G A G T C G A C T A C G T A C G T A G T C A G T C A G T C A T C G
A C G T A C G T A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AGCAGGGGCHTTCCCG
----GGGAATTTCC--
 G T C A C T A G G T A C G T C A A T C G A C T G A C T G A T C G A G T C G A C T A C G T A C G T A G T C A G T C A G T C A T C G
A C G T A C G T A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:AGCAGGGGCHTTCCCG--
--------NYTTCCCGCC
 G T C A C T A G G T A C G T C A A T C G A C T G A C T G A T C G A G T C G A C T A C G T A C G T A G T C A G T C A G T C A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T G A C T A G C T A T G C T G A C T A G C C A T G A T G C A T G C

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:10
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:AGCAGGGGCHTTCCCG-
-------RCATTCCWGG
 G T C A C T A G G T A C G T C A A T C G A C T G A C T G A T C G A G T C G A C T A C G T A C G T A G T C A G T C A G T C A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G