Information for 14-TGKGGWAAKTCCC (Motif 12)

A C G T A C T G A C T G C A T G A C T G G C A T C G T A C G T A A C G T G A C T A G T C A G T C A G T C
Reverse Opposite:
C T A G C T A G C T A G C T G A G T C A A C G T C G A T C G T A A G T C G T A C G T A C G T A C C G T A
p-value:1e-11
log p-value:-2.541e+01
Information Content per bp:1.732
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif41.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets38.2 +/- 28.2bp
Average Position of motif in Background49.2 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.71
Offset:3
Orientation:forward strand
Alignment:TGKGGWAAKTCCC
---GGAAATTCCC
 A C G T A C T G A C T G C A T G A C T G G C A T C G T A C G T A A C G T G A C T A G T C A G T C A G T C
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TGKGGWAAKTCCC
---GGAAATTCCC
 A C G T A C T G A C T G C A T G A C T G G C A T C G T A C G T A A C G T G A C T A G T C A G T C A G T C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:TGKGGWAAKTCCC
---GGAAATCCCC
 A C G T A C T G A C T G C A T G A C T G G C A T C G T A C G T A A C G T G A C T A G T C A G T C A G T C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TGKGGWAAKTCCC
-GGGGGAATCCCC
 A C G T A C T G A C T G C A T G A C T G G C A T C G T A C G T A A C G T G A C T A G T C A G T C A G T C
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TGKGGWAAKTCCC-
--GGGAAATCCCCN
 A C G T A C T G A C T G C A T G A C T G G C A T C G T A C G T A A C G T G A C T A G T C A G T C A G T C A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TGKGGWAAKTCCC
NATGTTGCAA-----
 A C G T A C G T A C G T A C T G A C T G C A T G A C T G G C A T C G T A C G T A A C G T G A C T A G T C A G T C A G T C
C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T

PH0053.1_Hoxa6/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGKGGWAAKTCCC--
NTNAGGTAATTACCTT
 A C G T A C G T A C T G A C T G C A T G A C T G G C A T C G T A C G T A A C G T G A C T A G T C A G T C A G T C A C G T A C G T
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TGKGGWAAKTCCC
---GGAAANCCCC
 A C G T A C T G A C T G C A T G A C T G G C A T C G T A C G T A A C G T G A C T A G T C A G T C A G T C
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGKGGWAAKTCCC
ATGATGCAAT----
 A C G T A C G T A C T G A C T G C A T G A C T G G C A T C G T A C G T A A C G T G A C T A G T C A G T C A G T C
T G C A A G C T A C T G C G T A A G C T C A T G G A T C T G C A C G T A A G C T A C G T A C G T A C G T A C G T

PH0103.1_Meox1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TGKGGWAAKTCCC--
CTGAGGTAATTACCNC
 A C G T A C G T A C T G A C T G C A T G A C T G G C A T C G T A C G T A A C G T G A C T A G T C A G T C A G T C A C G T A C G T
G A T C C G A T T C A G C T G A C A T G T A C G G A C T T G C A G C T A C A G T A C G T C T G A G T A C G T A C A C G T A G T C