Information for 11-TGCCTYRCCGCAG (Motif 11)

A C G T A C T G T A G C A G T C A C G T A G C T C T A G A G T C G T A C A C T G A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A G T C A C T G A C T G A G C T C T A G C G T A A C T G A T C G A G T C C G T A
p-value:1e-13
log p-value:-3.126e+01
Information Content per bp:1.880
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.8 +/- 21.5bp
Average Position of motif in Background64.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGCCTYRCCGCAG----
--CCACACAGCAGGAGA
 A C G T A C T G T A G C A G T C A C G T A G C T C T A G A G T C G T A C A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

RUNX2/MA0511.2/Jaspar

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:TGCCTYRCCGCAG
----AAACCGCAA
 A C G T A C T G T A G C A G T C A C G T A G C T C T A G A G T C G T A C A C T G A G T C C G T A A C T G
A C G T A C G T A C G T A C G T G C T A C T G A G T C A A G T C A G T C C T A G A G T C T G C A T C G A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:TGCCTYRCCGCAG----
--CCACACAGCAGGAGA
 A C G T A C T G T A G C A G T C A C G T A G C T C T A G A G T C G T A C A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

TFAP2C/MA0524.2/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGCCTYRCCGCAG
TGCCCTNGGGCA-
 A C G T A C T G T A G C A G T C A C G T A G C T C T A G A G T C G T A C A C T G A G T C C G T A A C T G
G A C T T A C G A T G C G A T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:forward strand
Alignment:TGCCTYRCCGCAG----
-----CACAGCAGGGGG
 A C G T A C T G T A G C A G T C A C G T A G C T C T A G A G T C G T A C A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

TFAP2B/MA0811.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGCCTYRCCGCAG
TGCCCTNGGGCA-
 A C G T A C T G T A G C A G T C A C G T A G C T C T A G A G T C G T A C A C T G A G T C C G T A A C T G
G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:TGCCTYRCCGCAG------
----DCHCAGCAGGRGGCC
 A C G T A C T G T A G C A G T C A C G T A G C T C T A G A G T C G T A C A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGCCTYRCCGCAG
TGCCCNGGGGCA-
 A C G T A C T G T A G C A G T C A C G T A G C T C T A G A G T C G T A C A C T G A G T C C G T A A C T G
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGCCTYRCCGCAG-----
---NTNGCCTCAGGCNNN
 A C G T A C T G T A G C A G T C A C G T A G C T C T A G A G T C G T A C A C T G A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TGCCTYRCCGCAG
---NAAACCACAG
 A C G T A C T G T A G C A G T C A C G T A G C T C T A G A G T C G T A C A C T G A G T C C G T A A C T G
A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G