Information for 6-CCCCCTGCTGGAAAVA (Motif 9)

G A T C A G T C G T A C A G T C A G T C C A G T A T C G A T G C G C A T C A T G A T C G T C G A G T C A C T G A T A C G C G T A
Reverse Opposite:
C G A T A T G C G A C T A C G T A G C T A T G C G T A C C G T A A T C G T A G C G C T A A C T G C T A G C A T G A C T G C A T G
p-value:1e-9
log p-value:-2.200e+01
Information Content per bp:1.679
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif71.6
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets52.6 +/- 28.4bp
Average Position of motif in Background54.0 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.71
Offset:-8
Orientation:forward strand
Alignment:--------CCCCCTGCTGGAAAVA
CNNBRGCGCCCCCTGSTGGC----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C A G T C G T A C A G T C A G T C C A G T A T C G A T G C G C A T C A T G A T C G T C G A G T C A C T G A T A C G C G T A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CCCCCTGCTGGAAAVA
TAGCGCCCCCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T G A T C A G T C G T A C A G T C A G T C C A G T A T C G A T G C G C A T C A T G A T C G T C G A G T C A C T G A T A C G C G T A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CCCCCTGCTGGAAAVA
ANAGTGCCACCTGGTGGCCA--
 A C G T A C G T A C G T A C G T A C G T A C G T G A T C A G T C G T A C A G T C A G T C C A G T A T C G A T G C G C A T C A T G A T C G T C G A G T C A C T G A T A C G C G T A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CCCCCTGCTGGAAAVA
CCCCCTGCTGTG----
 G A T C A G T C G T A C A G T C A G T C C A G T A T C G A T G C G C A T C A T G A T C G T C G A G T C A C T G A T A C G C G T A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCTGGAAAVA
GGCCYCCTGCTGDGH---
 A C G T A C G T G A T C A G T C G T A C A G T C A G T C C A G T A T C G A T G C G C A T C A T G A T C G T C G A G T C A C T G A T A C G C G T A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCTGGAAAVA
GACCCCCCGCTGTGC---
 A C G T A C G T G A T C A G T C G T A C A G T C A G T C C A G T A T C G A T G C G C A T C A T G A T C G T C G A G T C A C T G A T A C G C G T A
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCTGGAAAVA
GACCCCCCGCTGCGC---
 A C G T A C G T G A T C A G T C G T A C A G T C A G T C C A G T A T C G A T G C G C A T C A T G A T C G T C G A G T C A C T G A T A C G C G T A
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCTGGAAAVA
GACCCCCCGCTGTG----
 A C G T A C G T G A T C A G T C G T A C A G T C A G T C C A G T A T C G A T G C G C A T C A T G A T C G T C G A G T C A C T G A T A C G C G T A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCCCCTGCTGGAAAVA
SNGCACCTGCHS------
 A C G T A C G T G A T C A G T C G T A C A G T C A G T C C A G T A T C G A T G C G C A T C A T G A T C G T C G A G T C A C T G A T A C G C G T A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCCCCTGCTGGAAAVA
NNCACCTGNN-------
 A C G T G A T C A G T C G T A C A G T C A G T C C A G T A T C G A T G C G C A T C A T G A T C G T C G A G T C A C T G A T A C G C G T A
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T