Information for 6-CGGRGAAATC (Motif 8)

A G T C T A C G A T C G C T A G A T C G C T G A C G T A C T G A A C G T A G T C
Reverse Opposite:
A C T G C G T A A G C T C G A T A G C T A T G C G A T C A T G C A T G C A C T G
p-value:1e-7
log p-value:-1.817e+01
Information Content per bp:1.779
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif3.24%
Number of Background Sequences with motif150.9
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets61.2 +/- 26.3bp
Average Position of motif in Background50.6 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CGGRGAAATC------
AAGGCGAAATCATCGCA
 A C G T A G T C T A C G A T C G C T A G A T C G C T G A C G T A C T G A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Gfi1/MA0038.1/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:forward strand
Alignment:CGGRGAAATC----
----CAAATCACTG
 A G T C T A C G A T C G C T A G A T C G C T G A C G T A C T G A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

PB0126.1_Gata5_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CGGRGAAATC-----
GACAGAGATATCAGTGT
 A C G T A C G T A G T C T A C G A T C G C T A G A T C G C T G A C G T A C T G A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T

PB0127.1_Gata6_2/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGGRGAAATC-----
NGCTGCGATATCGNCGC
 A C G T A C G T A G T C T A C G A T C G C T A G A T C G C T G A C G T A C T G A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
G T A C C T A G T A G C A C G T T A C G G T A C C A T G T G C A C A G T G T C A A C G T G T A C C A T G A G T C T A G C T A C G G T A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGGRGAAATC---
-GGGGGAATCCCC
 A G T C T A C G A T C G C T A G A T C G C T G A C G T A C T G A A C G T A G T C A C G T A C G T A C G T
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

Stat4/MA0518.1/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGGRGAAATC-
TTTCCAGGAAATGG
 A C G T A C G T A C G T A G T C T A C G A T C G C T A G A T C G C T G A C G T A C T G A A C G T A G T C A C G T
A G C T G C A T C A G T T G A C G A T C C T G A C T A G C T A G C G T A C G T A T C G A A G C T T A C G T C A G

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CGGRGAAATC----
--GGGAAATCCCCN
 A G T C T A C G A T C G C T A G A T C G C T G A C G T A C T G A A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGGRGAAATC
TTCTTGGAAAN-
 A C G T A C G T A G T C T A C G A T C G C T A G A T C G C T G A C G T A C T G A A C G T A G T C
A G C T C G A T A G T C G A C T C A G T C T A G C T A G C T G A C G T A T C G A G A C T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:9
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CGGRGAAATC------
-----AAATCACAGCA
 A G T C T A C G A T C G C T A G A T C G C T G A C G T A C T G A A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CGGRGAAATC
ATTTCCNGGAAATN
 A C G T A C G T A C G T A C G T A G T C T A C G A T C G C T A G A T C G C T G A C G T A C T G A A C G T A G T C
C T G A G A C T A C G T A C G T G T A C G A T C G C T A C T A G C A T G C G T A C G T A C T G A G A C T T A C G