Information for 6-TGTCAATGTGCAT (Motif 9)

A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C T G C G A T A C T G A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A G T C C G T A G T A C C G T A A C G T A C G T A C T G C G T A A G T C C G T A
p-value:1e-5
log p-value:-1.162e+01
Information Content per bp:1.940
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets23.7 +/- 6.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0144.1_Pou2f2/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGTCAATGTGCAT----
-TNTAATTTGCATANNN
 A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C T G C G A T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.67
Offset:5
Orientation:forward strand
Alignment:TGTCAATGTGCAT--
-----ATTTGCATAA
 A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C T G C G A T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TGTCAATGTGCAT----
-TNTAATTTGCATACNA
 A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C T G C G A T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TGTCAATGTGCAT----
-TNTAATTTGCATACNA
 A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C T G C G A T A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TGTCAATGTGCAT--
--TTCATTTGCATAT
 A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C T G C G A T A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TGTCAATGTGCAT
CCTGTCAA-------
 A C G T A C G T A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C T G C G A T A C T G A G T C C G T A A C G T
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TGTCAATGTGCAT---
----AATTTGCATANT
 A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C T G C G A T A C T G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGTCAATGTGCAT-
--BTVATTWGCATA
 A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C T G C G A T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

POU3F4/MA0789.1/Jaspar

Match Rank:9
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:TGTCAATGTGCAT-
-----ATTTGCATA
 A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C T G C G A T A C T G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGTCAATGTGCAT
NTGTCAN-------
 A C G T A C G T A C T G A C G T A G T C C G T A C G T A A C G T A C T G C G A T A C T G A G T C C G T A A C G T
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T