Information for 3-CTGBATGGCG (Motif 7)

A G T C C G A T A C T G A C G T C T G A A C G T A C T G A C T G A G T C A T C G
Reverse Opposite:
A T G C C T A G A G T C A G T C C G T A A G C T T G C A A G T C C G T A C T A G
p-value:1e-3
log p-value:-8.231e+00
Information Content per bp:1.811
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif1.56%
Number of Background Sequences with motif9.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets49.5 +/- 27.4bp
Average Position of motif in Background42.8 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTGBATGGCG-
CGTGGGTGGTCC
 A C G T A G T C C G A T A C T G A C G T C T G A A C G T A C T G A C T G A G T C A T C G A C G T
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTGBATGGCG---
--TAATGGCGGNC
 A G T C C G A T A C T G A C G T C T G A A C G T A C T G A C T G A G T C A T C G A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

PB0164.1_Smad3_2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTGBATGGCG-------
NAGANTGGCGGGGNGNA
 A G T C C G A T A C T G A C G T C T G A A C G T A C T G A C T G A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGBATGGCG
CTGTCTGG--
 A G T C C G A T A C T G A C G T C T G A A C G T A C T G A C T G A G T C A T C G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:5
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CTGBATGGCG--
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T C T G A A C G T A C T G A C T G A G T C A T C G A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGBATGGCG---
-TGATTGGCTANN
 A G T C C G A T A C T G A C G T C T G A A C G T A C T G A C T G A G T C A T C G A C G T A C G T A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFYB/MA0502.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTGBATGGCG-----
CTGATTGGTCNATTT
 A G T C C G A T A C T G A C G T C T G A A C G T A C T G A C T G A G T C A T C G A C G T A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTGBATGGCG---
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A G T C C G A T A C T G A C G T C T G A A C G T A C T G A C T G A G T C A T C G A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

GLI2/MA0734.1/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTGBATGGCG--
CAGTGTGGTCGC
 A G T C C G A T A C T G A C G T C T G A A C G T A C T G A C T G A G T C A T C G A C G T A C G T
G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGBATGGCG
CTTGAGTGGCT
 A C G T A G T C C G A T A C T G A C G T C T G A A C G T A C T G A C T G A G T C A T C G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T