Information for 2-TVYCAATAAAGTTKTW (Motif 2)

G C A T T C A G G A T C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G G A C T C G A T A C G T A G C T C G A T
Reverse Opposite:
G C T A T C G A T G C A C G T A C T G A A G T C A C G T A C G T A C G T C G T A A C G T G A C T C T A G C T A G A G T C C G T A
p-value:1e-58
log p-value:-1.356e+02
Information Content per bp:1.730
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.69%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.1 +/- 14.0bp
Average Position of motif in Background36.1 +/- 15.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0078.1_Hoxd13/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TVYCAATAAAGTTKTW
CTACCAATAAAATTCT-
 A C G T G C A T T C A G G A T C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G G A C T C G A T A C G T A G C T C G A T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:TVYCAATAAAGTTKTW
--CCAATAAAAA----
 G C A T T C A G G A T C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G G A C T C G A T A C G T A G C T C G A T
A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TVYCAATAAAGTTKTW
AACCCAATAAAATTCG-
 A C G T G C A T T C A G G A T C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G G A C T C G A T A C G T A G C T C G A T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TVYCAATAAAGTTKTW
AATGCAATAAAATTTAT
 A C G T G C A T T C A G G A T C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G G A C T C G A T A C G T A G C T C G A T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

HOXB13/MA0901.1/Jaspar

Match Rank:5
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TVYCAATAAAGTTKTW
--CCAATAAAAC----
 G C A T T C A G G A T C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G G A C T C G A T A C G T A G C T C G A T
A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TVYCAATAAAGTTKTW
--GCAATAAAA-----
 G C A T T C A G G A T C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G G A C T C G A T A C G T A G C T C G A T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:7
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TVYCAATAAAGTTKTW
--CCAATAAAAA----
 G C A T T C A G G A T C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G G A C T C G A T A C G T A G C T C G A T
A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TVYCAATAAAGTTKTW
-NCYAATAAAA-----
 G C A T T C A G G A T C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G G A C T C G A T A C G T A G C T C G A T
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TVYCAATAAAGTTKTW
-CCYMATAAAA-----
 G C A T T C A G G A T C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G G A C T C G A T A C G T A G C T C G A T
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TVYCAATAAAGTTKTW
-GGTAATAAAAA----
 G C A T T C A G G A T C G A T C C T G A C G T A A C G T C G T A C G T A C G T A A C T G G A C T C G A T A C G T A G C T C G A T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T A C G T