Information for 5-TGCTTDGCAGAGAGCA (Motif 7)

C G A T A C T G A G T C A G C T C G A T C A T G A C T G A G T C C G T A T C A G C G T A A T C G G T C A C T A G A G T C C T G A
Reverse Opposite:
A G C T A C T G A G T C A C G T A T G C A C G T A G T C A C G T A C T G A G T C G T A C G C T A C T G A A C T G G T A C C G T A
p-value:1e-15
log p-value:-3.672e+01
Information Content per bp:1.774
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.6 +/- 26.5bp
Average Position of motif in Background43.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGCTTDGCAGAGAGCA
--CTTGGCAA------
 C G A T A C T G A G T C A G C T C G A T C A T G A C T G A G T C C G T A T C A G C G T A A T C G G T C A C T A G A G T C C T G A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TGCTTDGCAGAGAGCA-
---TTTGCACACGGCAC
 C G A T A C T G A G T C A G C T C G A T C A T G A C T G A G T C C G T A T C A G C G T A A T C G G T C A C T A G A G T C C T G A A C G T
A C G T A C G T A C G T C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGCTTDGCAGAGAGCA
-NNTTGGCANN-----
 C G A T A C T G A G T C A G C T C G A T C A T G A C T G A G T C C G T A T C A G C G T A A T C G G T C A C T A G A G T C C T G A
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TGCTTDGCAGAGAGCA
NNNVCTGWGYAAACASN-
 A C G T A C G T C G A T A C T G A G T C A G C T C G A T C A T G A C T G A G T C C G T A T C A G C G T A A T C G G T C A C T A G A G T C C T G A
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:TGCTTDGCAGAGAGCA
------CCAGACRSVB
 C G A T A C T G A G T C A G C T C G A T C A T G A C T G A G T C C G T A T C A G C G T A A T C G G T C A C T A G A G T C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0208.1_Zscan4_2/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:TGCTTDGCAGAGAGCA--
--CGAAGCACACAAAATA
 C G A T A C T G A G T C A G C T C G A T C A T G A C T G A G T C C G T A T C A G C G T A A T C G G T C A C T A G A G T C C T G A A C G T A C G T
A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.51
Offset:7
Orientation:forward strand
Alignment:TGCTTDGCAGAGAGCA-
-------CAAAGGTCAG
 C G A T A C T G A G T C A G C T C G A T C A T G A C T G A G T C C G T A T C A G C G T A A T C G G T C A C T A G A G T C C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TGCTTDGCAGAGAGCA--
--CTTGGCANNNTGCCAA
 C G A T A C T G A G T C A G C T C G A T C A T G A C T G A G T C C G T A T C A G C G T A A T C G G T C A C T A G A G T C C T G A A C G T A C G T
A C G T A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:TGCTTDGCAGAGAGCA
------CCAGACAG--
 C G A T A C T G A G T C A G C T C G A T C A T G A C T G A G T C C G T A T C A G C G T A A T C G G T C A C T A G A G T C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:TGCTTDGCAGAGAGCA
--CCAGGAACAG----
 C G A T A C T G A G T C A G C T C G A T C A T G A C T G A G T C C G T A T C A G C G T A A T C G G T C A C T A G A G T C C T G A
A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T