Information for 8-AGCACAATGTCCT (Motif 13)

C T G A A C T G A G T C C T G A A G T C C G T A G T C A C G A T A C T G A C G T A T G C G T A C C G A T
Reverse Opposite:
C G T A A C T G A T C G C G T A A G T C C G T A A C G T C G A T A C T G A G C T A C T G A G T C G A C T
p-value:1e-10
log p-value:-2.425e+01
Information Content per bp:1.838
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.3 +/- 21.1bp
Average Position of motif in Background50.8 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGCACAATGTCCT
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C T G A A C T G A G T C C T G A A G T C C G T A G T C A C G A T A C T G A C G T A T G C G T A C C G A T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGCACAATGTCCT
AGAGTCCAAAGTCCA
 A C G T A C G T C T G A A C T G A G T C C T G A A G T C C G T A G T C A C G A T A C T G A C G T A T G C G T A C C G A T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGCACAATGTCCT--
GGGGTCAAAGTCCAAT
 A C G T C T G A A C T G A G T C C T G A A G T C C G T A G T C A C G A T A C T G A C G T A T G C G T A C C G A T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AGCACAATGTCCT-
GRACAGWMTGTYCTB
 A C G T C T G A A C T G A G T C C T G A A G T C C G T A G T C A C G A T A C T G A C G T A T G C G T A C C G A T A C G T
C T A G C T G A C T G A T A G C C G T A A T C G C G T A T G C A G A C T T C A G G C A T G A C T G A T C G A C T A C T G

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:5
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGCACAATGTCCT-
AGGTCANTGACCTN
 C T G A A C T G A G T C C T G A A G T C C G T A G T C A C G A T A C T G A C G T A T G C G T A C C G A T A C G T
T C G A C A T G C A T G A C G T A T G C T C G A C T G A A G C T T A C G T G C A G T A C G A T C A G C T A G T C

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGCACAATGTCCT-
GVACAGNMTGTYCTB
 A C G T C T G A A C T G A G T C C T G A A G T C C G T A G T C A C G A T A C T G A C G T A T G C G T A C C G A T A C G T
C T A G T C G A C G T A T A G C C G T A C A T G C G T A T G A C G C A T T A C G G A C T A G C T G A T C G A C T A C T G

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGCACAATGTCCT-
GAACADWATGTTCTT
 A C G T C T G A A C T G A G T C C T G A A G T C C G T A G T C A C G A T A C T G A C G T A T G C G T A C C G A T A C G T
C T A G C G T A C G T A A G T C C G T A C A G T C G T A G T C A C G A T A C T G A C G T G C A T A G T C G A C T G C A T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AGCACAATGTCCT-
AGNACAGNCTGTTCTN
 A C G T A C G T C T G A A C T G A G T C C T G A A G T C C G T A G T C A C G A T A C T G A C G T A T G C G T A C C G A T A C G T
C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGCACAATGTCCT-
AGNACANNNTGTNCTN
 A C G T A C G T C T G A A C T G A G T C C T G A A G T C C G T A G T C A C G A T A C T G A C G T A T G C G T A C C G A T A C G T
C T G A C T A G T C G A C G T A A G T C C T G A A T C G C G T A T A G C G A C T A C T G A C G T A G C T A G T C G A C T A T G C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:AGCACAATGTCCT----
-GGCAAAAGTCCAATAA
 C T G A A C T G A G T C C T G A A G T C C G T A G T C A C G A T A C T G A C G T A T G C G T A C C G A T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T