Information for 19-NCGCTGTGAV (Motif 21)

A C T G T A G C C T A G A T G C G C A T A T C G G C A T A C T G C G T A T C A G
Reverse Opposite:
A G T C G C A T T G A C C G T A T A G C C G T A A T C G G A T C A T C G T G A C
p-value:1e-8
log p-value:-1.915e+01
Information Content per bp:1.684
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.70%
Number of Background Sequences with motif502.7
Percentage of Background Sequences with motif1.16%
Average Position of motif in Targets57.7 +/- 25.0bp
Average Position of motif in Background46.5 +/- 31.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.77
Offset:2
Orientation:forward strand
Alignment:NCGCTGTGAV
--GCTGTG--
 A C T G T A G C C T A G A T G C G C A T A T C G G C A T A C T G C G T A T C A G
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

PH0158.1_Rhox11_2/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---NCGCTGTGAV----
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C T G T A G C C T A G A T G C G C A T A T C G G C A T A C T G C G T A T C A G A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---NCGCTGTGAV----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C T G T A G C C T A G A T G C G C A T A T C G G C A T A C T G C G T A T C A G A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:4
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---NCGCTGTGAV----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C T G T A G C C T A G A T G C G C A T A T C G G C A T A C T G C G T A T C A G A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:NCGCTGTGAV--
--GCAGTGATTT
 A C T G T A G C C T A G A T G C G C A T A T C G G C A T A C T G C G T A T C A G A C G T A C G T
A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----NCGCTGTGAV-
NNTCCTGCTGTGNNN
 A C G T A C G T A C G T A C G T A C T G T A G C C T A G A T G C G C A T A T C G G C A T A C T G C G T A T C A G A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:NCGCTGTGAV
--GCTGTCAA
 A C T G T A G C C T A G A T G C G C A T A T C G G C A T A C T G C G T A T C A G
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

Gfi1b/MA0483.1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:NCGCTGTGAV--
-TGCTGTGATTT
 A C T G T A G C C T A G A T G C G C A T A T C G G C A T A C T G C G T A T C A G A C G T A C G T
A C G T C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:NCGCTGTGAV
-NGCTN----
 A C T G T A G C C T A G A T G C G C A T A T C G G C A T A C T G C G T A T C A G
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-NCGCTGTGAV
CCTGCTGAGH-
 A C G T A C T G T A G C C T A G A T G C G C A T A T C G G C A T A C T G C G T A T C A G
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T